Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000617-TA|BGIBMGA000617-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
(221 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 62 5e-11
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ... 41 1e-04
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 36 0.006
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.058
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 30 0.23
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.54
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.54
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 29 0.54
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 29 0.72
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 28 0.95
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.95
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 28 1.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 2.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 2.2
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 2.2
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 27 2.9
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 26 3.8
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 3.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 3.8
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 3.8
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.8
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 6.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 6.7
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 25 8.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.8
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 62.5 bits (145), Expect = 5e-11
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 6/194 (3%)
Query: 11 SQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQAT 70
++ L L Q + +QK+ D L + A+ +L+ ++ L Q
Sbjct: 49 TKNLHEVLEQSRELSQKVRSDLVRLA-NIKDTKYGEEASSFALSKLTRDFNTVLAELQRV 107
Query: 71 QRLVAQKTKEDVKKAKAQ-SINIGDPFAMGNSNKDLVEMTETDVRK----QEQMNMQAXX 125
Q+ AQ+ + V A+A + ++G F + + R+ + N Q
Sbjct: 108 QQKCAQQESDSVAAAQAALNQDVGQHFIEEEERNVSLSNNSSGQRQPLTESKISNSQLEY 167
Query: 126 XXXXXXXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQ 185
+I L I +N+IF++LST+I+ QGE+V +IE +V T+ N ++A++Q
Sbjct: 168 QQRLINERQGEIENLTQGINELNEIFRDLSTIINEQGELVTNIEYNVGNTSTNTKNASRQ 227
Query: 186 LREAGNYKNKLRKK 199
L+ A + K RK+
Sbjct: 228 LQIANEHSRKARKR 241
>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 284
Score = 41.1 bits (92), Expect = 1e-04
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 18/205 (8%)
Query: 10 DSQELRAQLRQIQNYTQKLAK-DTS------SLLMELMRMPKDN--AANKLTRERLSDEY 60
D + A R ++ YT + TS SL + M++P DN A K E + ++
Sbjct: 54 DEANIAATTRHLEGYTSDTRRLQTSVQLAIRSLESQNMQLPPDNDTATRKTQTEAVKKKF 113
Query: 61 IATLNSFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLV-EMTETDVRKQEQM 119
+ + F ++ + ++ +++ + I +P A + + + E V Q +
Sbjct: 114 MDQIRHFLQIEKTYRAQYEQRMRR----QLEIANPRATEDDFQTAINEENGGQVFAQALL 169
Query: 120 NM----QAXXXXXXXXXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYT 175
+A DI+++E I + +F++++TM+ Q +VD I +
Sbjct: 170 RSNRSGEARTALREVQERHADIKRIERTIAELAQLFQDMATMVQEQEPMVDKIVTDAVNV 229
Query: 176 AQNVESATQQLREAGNYKNKLRKKK 200
N+ TQ + A RKKK
Sbjct: 230 RTNMGEGTQHMDRAIKSARAARKKK 254
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.5 bits (78), Expect = 0.006
Identities = 21/93 (22%), Positives = 39/93 (41%)
Query: 94 DPFAMGNSNKDLVEMTETDVRKQEQMNMQAXXXXXXXXXXXXDIRQLESDILTVNDIFKE 153
DP N + + + + + EQM + I+ +ES I + IF +
Sbjct: 185 DPKPEANEDYLSLNLGDGANTRYEQMALLESQTDTYSQQRMSSIQNIESTITELGGIFSQ 244
Query: 154 LSTMIHAQGEVVDSIESSVEYTAQNVESATQQL 186
L+ M+ Q E V I+ + N+ SA +++
Sbjct: 245 LAQMVSEQRETVQRIDMHTDDIVSNIGSAQREI 277
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 32.3 bits (70), Expect = 0.058
Identities = 31/165 (18%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Query: 10 DSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRE-RLSDEYIATLNSF- 67
+ Q+L AQLR I ++ LA++ S++ + N A++ T + L +A L++
Sbjct: 397 EQQDLVAQLRDIVLRSETLAENPSNMPGSCLPGASSNTADEFTEQLNLLKNEVARLSAIC 456
Query: 68 QATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQEQMNMQAXXXX 127
+ + + + +++ + + A ++ + + D +Q QMN++
Sbjct: 457 PSPNSGINASVLTNADNLEKENLLLVNNNAFKVDDRSVSSVALDDHNRQLQMNVE--ELE 514
Query: 128 XXXXXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSV 172
I +L+ D + +N + L+ + + + IES V
Sbjct: 515 GKKADLTSKINRLDKDFVKLNTTYSLLTDQVKTKQLALQEIESRV 559
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.3 bits (65), Expect = 0.23
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 17 QLRQIQNYTQKLAKDTS-SLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVA 75
++++IQ T++ K+ S LM+ M + KD LT DEY L L A
Sbjct: 273 RMKEIQRQTKERQKEAQLSKLMKDMHVSKDKEDVGLTVSDAEDEYNGELVDPDEDDGLTA 332
Query: 76 QKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQ 116
+ +ED+ K ++ I D S++ L+EM T+ KQ
Sbjct: 333 E-DREDMIKQYRVALGISDDI----SDEKLLEML-TERMKQ 367
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 29.1 bits (62), Expect = 0.54
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 44 KDNAANKLTRERLSDEYIATLNSFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNK 103
K+ N + + SDE + Q L Q++ E+ KK+K F NS K
Sbjct: 374 KEIKENSFSENQQSDEADYNVTDDLILQ-LATQQSLEENKKSKELFSLSASEFDKLNSEK 432
Query: 104 DLVEMTETDVRKQEQMN 120
E+ TD+ ++ MN
Sbjct: 433 KTFEILSTDIPAEDSMN 449
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.1 bits (62), Expect = 0.54
Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 14 LRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERL-SDEYIATLNSFQATQR 72
LR L QN Q +D + ++ + N+ +++ R+ + ++ + + + T+R
Sbjct: 813 LRPLLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTER 872
Query: 73 LVAQKTKEDVKKAKAQSINIGDPFA 97
+A +E +++ + + NI D F+
Sbjct: 873 AIALDKEEILRRTQERLANIEDSFS 897
Score = 25.0 bits (52), Expect = 8.8
Identities = 37/190 (19%), Positives = 76/190 (40%), Gaps = 6/190 (3%)
Query: 9 QDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQ 68
Q + EL ++L + + + L + + L +L KD K E L + AT+ S +
Sbjct: 915 QINNELESELLEKTSKVETLLSEQNELKEKLSLEEKDLLDTKGELESLRENN-ATVLSEK 973
Query: 69 ATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQEQMNMQAXXXXX 128
A + +E + A+ + + + ++ EM T+ + E+ Q
Sbjct: 974 AEFNEQCKSLQETIVTKDAELDKLTK--YISDYKTEIQEMRLTNQKMNEKSIQQEGSLSE 1031
Query: 129 XXXXXXXDIRQ---LESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQ 185
R+ L SD+ + +ELS + Q ++++E V Y +V+ +
Sbjct: 1032 SLKRVKKLERENSTLISDVSILKQQKEELSVLKGVQELTINNLEEKVNYLEADVKQLPKL 1091
Query: 186 LREAGNYKNK 195
+E + +K
Sbjct: 1092 KKELESLNDK 1101
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 29.1 bits (62), Expect = 0.54
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 13 ELRAQLRQIQNYTQ--KLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSF 67
EL A+ Q TQ K K+ +++ ++MR + N ++T++++ D++ + SF
Sbjct: 905 ELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVKPEMTQQQMMDQFQKVIGSF 961
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.7 bits (61), Expect = 0.72
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 137 IRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKNKL 196
+R+ E+ + +N EL I + + ++S+++ ++ L E GN +NK
Sbjct: 1011 LREFENALWDINSSIDELVKFIEFESKQMNSVKAERIELENQIQEQRTALSEVGNNENKY 1070
Query: 197 RK 198
K
Sbjct: 1071 LK 1072
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 28.3 bits (60), Expect = 0.95
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 6 QTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLN 65
Q D++EL +L ++ KD S ELM + A + E+L++ +
Sbjct: 714 QDASDNEELERKLDKVLEDADAKVKDEESSEEELMNDEQMLALD----EKLAEVFRERKK 769
Query: 66 SFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDL 105
+ ++ AQ+TK+ + + K + I++ D + N L
Sbjct: 770 ASNKEKKKNAQETKQQIVQFKVKVIDLIDNYYKTQPNNGL 809
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 0.95
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 14 LRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQA 69
L+++ + + KL D S+L +L + +DN K E + EY AT++S +
Sbjct: 784 LKSENLLLTSVKDKLKADLSNLESKLSSLQQDNFHMKAQIESSNQEYTATVDSMNS 839
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 31 DTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRL 73
D + + LM + KD A+ LTRE L+DE A + + +RL
Sbjct: 207 DPAEIRFNLMVICKDKKASLLTREDLTDEEKAASIAVEDEKRL 249
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 16 AQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVA 75
+ L+Q +N T + S + + N KL E+L D+ A L Q+ Q +
Sbjct: 294 SNLKQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEAL- 352
Query: 76 QKTKEDVKKAKAQSIN 91
+ K D K + + N
Sbjct: 353 ETVKNDEKNLREMNAN 368
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 9 QDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQ 68
Q + + R + R Y L K+ + E +R D+ N L++ R+S ++T+N+F
Sbjct: 321 QSAMKKREKQRSKDEYAS-LYKEYTRKEQEKLRKQNDDLQNLLSKHRISRIPMSTVNAFL 379
Query: 69 ATQRLVAQKTKED 81
+ + + ++
Sbjct: 380 RAEDSIPESFSDE 392
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 162 GEVVDSIESSVEYTAQNVESA 182
G++ D+IE V+ TAQ+VE A
Sbjct: 431 GQIADAIEEDVKGTAQSVEQA 451
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 26 QKLAKDTSSLLMELMRMPKDNA-ANKLTRERLSDEYIATLNSF 67
QK+ D + LM+ +R+PK+ +LS E A+ N F
Sbjct: 325 QKMVLDQADFLMKYLRIPKEGLYYRNFGLYKLSPELTASFNKF 367
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 3 NQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERL 56
N L+ P E QL+ I ++ ++ LME+M + ++ +A++ + E+L
Sbjct: 122 NTLKAPLTRAEYILQLQGINPVSEDISNSDPEFLMEIMDVHENISASRDSPEKL 175
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 4 QLQTPQD-SQELRAQLRQIQNYTQKLAKDTS--SLLMELMRMPKD------NAANKLTRE 54
Q+ P + +RA+ R I+N +Q+L TS L R+PK+ + ++K +
Sbjct: 84 QISNPTSKTNNVRAKARNIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSISSKESPS 143
Query: 55 RLSDEYIATLN--SFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGN 100
+ +++AT+ S + R+ + + +AK+ S+ + P +GN
Sbjct: 144 VTTSKHVATITKPSTSSIARMSSNARIAAIPRAKS-SMAVRSPSRLGN 190
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 136 DIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKN 194
D+R+ I + D KEL++ + + V+ S+ +V + ES + L +GN K+
Sbjct: 595 DLRRFHESINKLQDREKELTSNLEKKNLVISSLRETVAMLEKERESIKKYL--SGNAKD 651
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 170 SSVEYTAQNVESATQQLREAGNYKNKLRKKK 200
SS+ Y +NV++A +QL E +KN+ +K
Sbjct: 32 SSINYADRNVQAALEQLSER-KFKNEREARK 61
>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 131
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/84 (17%), Positives = 39/84 (46%)
Query: 7 TPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNS 66
T Q+S LR ++R+I+ ++ LL + + + + +E+L +E +
Sbjct: 15 TLQESIPLRRRIREIRELQERNKNKYEQLLQARKDLDRFRSNLNVQQEQLQNEILGFKQD 74
Query: 67 FQATQRLVAQKTKEDVKKAKAQSI 90
+ ++ + E+++K +S+
Sbjct: 75 VKLLNNVLVSYSSEELEKRFEESL 98
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 6.7
Identities = 19/84 (22%), Positives = 33/84 (39%)
Query: 21 IQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQKTKE 80
I + Q++ K T ++ + M +N+ S IA L + TQ+ +++K K
Sbjct: 240 IASNLQEIKKGTKEYSLKSLEMTTTKESNETLCSNDSKHRIARLKNEDNTQKPISKKRKS 299
Query: 81 DVKKAKAQSINIGDPFAMGNSNKD 104
K S GN K+
Sbjct: 300 KKASHKYLSSRTAPNVDFGNFAKE 323
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 6.7
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 MVNQLQTPQDS--QELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSD 58
+ NQL T + S + + +L+ NY ++L K + +L + ++ + RERL
Sbjct: 541 LANQLMTLKSSFSEVMSYELKDDDNYNEELDKLVEDVRKKLQEKEEAESSLRSVRERLEI 600
Query: 59 EYIATLNSFQATQRLVAQKTK 79
++ S KTK
Sbjct: 601 RISLSVQSINDLTENKKIKTK 621
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 37 MELMRMPKDNAANKLT-RERLSDEYIATLNSFQATQR 72
+E + KD NK+ + SDE LN +Q TQR
Sbjct: 210 IEFATITKDTTKNKMVCKIWKSDEINEVLNKYQETQR 246
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 136 DIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKNK 195
D+ QL + V +++ E + + E+ V A V +A + GNY N+
Sbjct: 1442 DVTQLTEVLELVFNVYSEKTPVFFTHLVPYRLYEAEVLAEAGEVSAARKYCELIGNYLNR 1501
Query: 196 LRKK 199
+ KK
Sbjct: 1502 VAKK 1505
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 2 VNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPK----DNAANKLTRERLS 57
V + T +D Q LR+ ++Q K +KD + LM+ + + A KL ++ +
Sbjct: 1863 VEETFTDEDGQALRSFSEKLQKLNAKNSKDDLCIEQYLMKSERSFFHERRAIKLGLQKPN 1922
Query: 58 DEYIATLNSFQATQ 71
++ L+S T+
Sbjct: 1923 KLHVNELSSHSGTE 1936
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.123 0.315
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,012
Number of Sequences: 5004
Number of extensions: 24169
Number of successful extensions: 121
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 27
length of query: 221
length of database: 2,362,478
effective HSP length: 70
effective length of query: 151
effective length of database: 2,012,198
effective search space: 303841898
effective search space used: 303841898
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)
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