Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000617-TA|BGIBMGA000617-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
(221 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1076 - 8474869-8474934,8475028-8475128,8475248-8475405,847... 73 1e-13
06_01_0839 + 6365962-6366798 66 3e-11
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 50 1e-06
12_01_0574 - 4697425-4698312 44 7e-05
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423 42 3e-04
06_03_0619 + 22801576-22802016,22802111-22802596 42 4e-04
03_06_0223 + 32481444-32482436 40 0.001
01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412... 40 0.001
06_01_0115 - 901385-901495,902134-902163,902847-902927,903019-90... 40 0.002
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869... 33 0.14
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 32 0.42
11_04_0061 + 13013963-13014070,13015228-13015422,13017927-130180... 31 0.98
07_01_1098 - 10083800-10084447,10084523-10084792 30 1.7
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 1.7
06_02_0105 - 11893666-11895483,11895661-11896422 29 2.3
04_01_0230 - 2921845-2922690 29 2.3
11_01_0327 - 2446949-2446999,2447060-2447299,2447542-2447813,244... 28 5.2
10_08_0420 - 17788170-17788178,17788239-17789174 28 5.2
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 28 5.2
12_01_0660 + 5585172-5585356,5585717-5585761,5586942-5587026,558... 28 6.9
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432... 27 9.1
>01_01_1076 -
8474869-8474934,8475028-8475128,8475248-8475405,
8475554-8475628,8476528-8476667,8477284-8477377,
8478063-8478271
Length = 280
Score = 73.3 bits (172), Expect = 1e-13
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 1 MVNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMP---KDNAANKLTRERLS 57
+VN L TP+D+ +LR ++ + + + +L KDTS L + + +A+ K+ +L+
Sbjct: 53 LVNTLGTPKDTPDLRERIHKTRQHITQLVKDTSEKLKQASEADHRVEVSASKKIADAKLA 112
Query: 58 DEYIATLNSFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTET---DVR 114
++ A L FQ QRL ++ + + N+ D + T + R
Sbjct: 113 KDFQAVLKEFQKAQRLAVEREAAYAPFISQAGLPQSYNSSEVNNGADKLAEQRTALLESR 172
Query: 115 KQEQMNMQAXXXXXXXXXXXXD--IRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSV 172
+QE + + D I++++ I VN+IFK+L+ ++H QG+++D I++ +
Sbjct: 173 RQELVFLDNEIVFNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMIDDIDTHI 232
Query: 173 EYTAQNVESATQQLREA 189
E A QL +A
Sbjct: 233 ENAVIATTQAKGQLSKA 249
>06_01_0839 + 6365962-6366798
Length = 278
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/201 (22%), Positives = 95/201 (47%), Gaps = 7/201 (3%)
Query: 1 MVNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEY 60
M L TP+D+ LR +LR + ++LA TS L + D+ + + +L+ ++
Sbjct: 42 MAGALGTPRDTPSLRGRLRGTRAGIKRLATSTSQALRQAAAAADDDESVS-SCSKLAMDF 100
Query: 61 IATLNSFQATQRLVAQKTKEDVKKAKAQSINIGDP-FAMGNSNKD--LVEMTETDVRKQE 117
A +N +Q +R +A +++ A +S P F N+N D E +T +
Sbjct: 101 EAAVNEYQKIERRIAAVERQETAAAARRSPPPPTPGFNHINNNGDHTFPEQKQTQLAVLR 160
Query: 118 QMNM---QAXXXXXXXXXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEY 174
+N+ + I +++ +I +++IF++L+ ++H QGE ++ + +++E
Sbjct: 161 DINLLDSEIELHEAIIAEREQGILEVQQEIADIHEIFRDLAVLVHDQGECIEIVTANIEM 220
Query: 175 TAQNVESATQQLREAGNYKNK 195
T A Q+ +A + +
Sbjct: 221 TEAATSQAEVQISKAAGIRGE 241
>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 137 IRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKNKL 196
++++E +L + IF ++S ++ AQGE++D+IES V A+++++ T L++A +
Sbjct: 1084 VKEIEQKLLELQQIFLDMSVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQKNT 1143
Query: 197 RK 198
RK
Sbjct: 1144 RK 1145
>12_01_0574 - 4697425-4698312
Length = 295
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 120 NMQAXXXXXXXXXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNV 179
N A + ++E +L + +F +++ ++ +QG VD IE V A +V
Sbjct: 168 NTDAEAAVRAAMKSSSEAEEVEGGLLELQQLFLDMAALVESQGARVDDIERHVAAAAGDV 227
Query: 180 ESATQQLREAGNYKNKLRKKKVYLA 204
+A +LREA + R+++++L+
Sbjct: 228 GAAEGELREAQRLRVAARRRRLWLS 252
>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
Length = 529
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/61 (27%), Positives = 36/61 (59%)
Query: 138 RQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKNKLR 197
R++E +L ++ +F +++ ++ +QGE +D IE V V+ ++LR+A ++ R
Sbjct: 224 REVERSLLELHQVFLDMAVVVESQGEQLDDIERHVNSATTYVQGGNKELRKAREHQRSSR 283
Query: 198 K 198
K
Sbjct: 284 K 284
>06_03_0619 + 22801576-22802016,22802111-22802596
Length = 308
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 64 LNSFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETD--VRK--QEQM 119
++ FQ + +A + KE V + + + A ++ L+E E++ ++K QEQ
Sbjct: 143 MDDFQGLRTRMAAEYKETVAR---RYYTVTGEKAEDSTIDSLIESGESESFLQKAIQEQG 199
Query: 120 NMQAXXXXXXXXXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNV 179
Q ++ +E +L ++ +F +++ ++ AQG ++ IES V + + V
Sbjct: 200 RGQVMDTISEIQERHDAVKDIERSLLDLHQVFLDMAALVEAQGHQLNDIESHVAHASSFV 259
Query: 180 ESATQQLREAGNYKNKLRK 198
T +L A ++ RK
Sbjct: 260 RRGTVELEVAREHQKSSRK 278
>03_06_0223 + 32481444-32482436
Length = 330
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 137 IRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKNKL 196
+ +LE +L ++ +F +++ ++ AQGE +D IE+ V V+ +QL A ++
Sbjct: 222 VAELERSLLELHQVFNDMAVLVAAQGEQLDDIETHVGRARSFVDRGREQLVVARKHQKST 281
Query: 197 RK 198
RK
Sbjct: 282 RK 283
>01_01_0560 +
4117203-4117458,4119359-4119609,4119691-4119860,
4120188-4120385,4120922-4121081
Length = 344
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 137 IRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQL 186
++ +ES I +++IF +L+TM+ QGE+ I+ +++ T NVE A QL
Sbjct: 262 LQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQL 311
>06_01_0115 -
901385-901495,902134-902163,902847-902927,903019-903084,
903207-903284,904708-904791,904881-904970,905069-905345,
905765-905973
Length = 341
Score = 39.9 bits (89), Expect = 0.002
Identities = 39/185 (21%), Positives = 82/185 (44%), Gaps = 11/185 (5%)
Query: 11 SQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQAT 70
+ E+ L++ + QKL+ SS + + + + A L + LS E+ +++
Sbjct: 129 THEVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQRSLATDL--QSLSMEFRKKQSTY--L 184
Query: 71 QRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQEQMNMQAXXXXXXX 130
++L QK +D + F +G+ + V TE + K ++
Sbjct: 185 KQLRQQKEGQDGVDLEMNMNGSKSTFELGDDEFEDVGFTEVQMSKLKKSE-------AFT 237
Query: 131 XXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAG 190
+I Q+ + + I K+LS ++ QG ++D I+ +++ A +VE +QL++A
Sbjct: 238 REREREIEQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVAASVEEGYKQLQKAE 297
Query: 191 NYKNK 195
+ K
Sbjct: 298 RTQKK 302
>02_05_0437 -
28986459-28986524,28986606-28986731,28986842-28986941,
28987583-28987660,28987857-28987937,28989488-28989624,
28989693-28989743,28989785-28989878,28990091-28990260
Length = 300
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 1 MVNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEY 60
++N L TP+D+ LR QL++ + +LAKD L K+ A+ E + D+
Sbjct: 40 LLNSLGTPKDTPALRDQLQKTSHNILQLAKDAKEKLRRAAEADKN--ADTSPSEFVLDKT 97
Query: 61 IATLNSFQATQRLVAQKTKED 81
++ A +R+ K +D
Sbjct: 98 VSNYMCDHADKRVADMKLAKD 118
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 31.9 bits (69), Expect = 0.42
Identities = 36/189 (19%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 11 SQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQAT 70
++E+R R+ ++Y ++ +D +L +EL ++ + E+++ E +
Sbjct: 367 NEEMRNLHRRARDYALRVFQDNENLKLELDSRRRELNSRAKQLEKITAENASDRKKLDDQ 426
Query: 71 QRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQEQMNMQAXXXXXXX 130
+ QK K+D + + SI +++D++++ E R++E +
Sbjct: 427 K----QKAKDDNSELELASIE------QQRADEDVMKLVEDQKREKEDV----LARMLQL 472
Query: 131 XXXXXDIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLRE-A 189
+ +QLE ++ +N L M H +G+ I +E ++ +E ++L E +
Sbjct: 473 EKELHEKQQLELEVTRLNG---TLQVMKHLEGDDDGDIHDKMEKLSERLEHEKKRLEELS 529
Query: 190 GNYKNKLRK 198
G K R+
Sbjct: 530 GELVKKERE 538
>11_04_0061 +
13013963-13014070,13015228-13015422,13017927-13018046,
13018377-13019015
Length = 353
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 136 DIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREA 189
+I L++ + D F++LS + + ++D++E + + ++V +QLREA
Sbjct: 171 EIDSLKAQLQVHGDQFQQLSDQYNDRRGMMDTLEEQLRESQEHVSQLEEQLREA 224
>07_01_1098 - 10083800-10084447,10084523-10084792
Length = 305
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 142 SDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREA 189
+D+ D FK+LS + + ++DS+E + + ++V +QLR A
Sbjct: 87 TDLSVHGDQFKQLSDQYNDRRGMMDSLEEQLRESQEHVSQLEEQLRAA 134
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 12 QELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQ 71
+ L A++ +++ T++ AK+ S L L + KD A TR LS + +A L+S
Sbjct: 193 ESLEAEIEKLKQNTEEQAKEISDLKHLLDKAIKDKEA---TRVELSSD-VANLSSENENL 248
Query: 72 RLVAQKTKED 81
+L+ + T+ +
Sbjct: 249 KLLVETTERE 258
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 33 SSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQKTKEDVKKAKAQSI 90
+ +++EL R+ K+ + +K E + + N ++ T+RL+ + + D++KA+ + I
Sbjct: 256 NEIVLELDRLKKEISESKRQAEAVEAAKVPLSNEYEKTKRLI-EGLEHDLEKAQEEEI 312
>04_01_0230 - 2921845-2922690
Length = 281
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 136 DIRQLESDILTVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREA 189
+I L++ + D F++LS + + ++DS+E + + ++V +QLR A
Sbjct: 57 EIDSLKAQLQVHGDQFQQLSDQYNDRRGMMDSLEEQLRESQEHVNQLEEQLRAA 110
>11_01_0327 -
2446949-2446999,2447060-2447299,2447542-2447813,
2447917-2447956,2448057-2448134,2448212-2448271,
2448434-2448493,2449620-2449766,2449921-2450018,
2450455-2450582,2451275-2451321
Length = 406
Score = 28.3 bits (60), Expect = 5.2
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 8/152 (5%)
Query: 6 QTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLN 65
Q PQ Q + ++ K K M + ++ A R++ YI L
Sbjct: 132 QIPQQEQHKKMATNS-PTHSSKTGKALDPKTMRRLAQNREAARKSRLRKKA---YIQQLE 187
Query: 66 SFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDVRKQEQMNMQAXX 125
S +L + ++D+ +A++Q + +G P +S + ++ +++ M
Sbjct: 188 S----SKLKLAQMEQDIHRARSQGLLLGAPGGNTSSGAAMFDVDYARWLEEDSQRMAELH 243
Query: 126 XXXXXXXXXXDIRQLESDILTVNDIFKELSTM 157
D+R + D LT D L M
Sbjct: 244 GGLHAHLPDSDLRAIVDDTLTHYDHLFNLKGM 275
>10_08_0420 - 17788170-17788178,17788239-17789174
Length = 314
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 147 VNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKNKLRKKKV 201
++D E+ M H + S E+ NV ++ RE GN KN KKV
Sbjct: 107 MHDSEDEIDDMRHRKKLFYKLDRGSKEFEENNVSLRHRRKREKGNVKNPKESKKV 161
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 54 ERLSDEYIATLNSFQATQRLVAQKTKEDVKKAKAQSINIGDPFAMGNSNKDLVEMTETDV 113
E + DEY L S TQR + + KK K Q I+ A+ + +K++ + E +
Sbjct: 355 ETIVDEYNRLLASQLETQREYYEARLSEAKKEKEQHISDAVDKAVNDKSKEIQQKIENAM 414
Query: 114 RKQEQM 119
+++++
Sbjct: 415 LEKKKL 420
>12_01_0660 +
5585172-5585356,5585717-5585761,5586942-5587026,
5587666-5587730,5587887-5587986,5588209-5588250,
5588400-5588441,5588659-5588952
Length = 285
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 9 QDSQELRAQLRQIQNYTQKLAKD-TSSLLMELMRMPKDNAANKLTRERL-SDEYIATLNS 66
Q+S +LR Q++ +QN + L D S+L ++ ++ + +++ R +E +A+ +
Sbjct: 110 QESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEIN 169
Query: 67 FQATQRLVAQKTKEDVKKAKAQ 88
+ A + + Q D++ A+
Sbjct: 170 YMAKREIELQNDNMDLRTKIAE 191
>01_01_0585 -
4328725-4329030,4329333-4329551,4329752-4329820,
4329925-4331469,4332220-4332429,4332563-4332713,
4332791-4333031,4333898-4333956,4334379-4334653,
4334813-4334955,4335034-4335088,4335181-4335258,
4335351-4335478,4335533-4335575
Length = 1173
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 8 PQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIAT 63
PQDSQ+ +AQ+ Y + D+ ++ ++ + +K +RL DE +AT
Sbjct: 50 PQDSQQKQAQILAYVEYFGQFTADSEQFPEDIAQLIQSCYPSK--EKRLVDEVLAT 103
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.123 0.315
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,995,480
Number of Sequences: 37544
Number of extensions: 117075
Number of successful extensions: 383
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 24
length of query: 221
length of database: 14,793,348
effective HSP length: 79
effective length of query: 142
effective length of database: 11,827,372
effective search space: 1679486824
effective search space used: 1679486824
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)
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