GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000617-TA|BGIBMGA000617-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
         (221 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    29   0.082
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    29   0.082
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.44 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   1.8  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    25   1.8  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   3.1  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   5.4  

>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 0.082
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 24  YTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRL-VAQKTKED 81
           Y  KLA + +  L E+ ++PK N  NK T        +   + +   Q+L V+QK +E+
Sbjct: 531 YAYKLAYEIADELQEISQVPKSNTLNKFTILARVLRTMHYQDIYDVCQKLFVSQKEREE 589


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 29.5 bits (63), Expect = 0.082
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 24  YTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRL-VAQKTKED 81
           Y  KLA + +  L E+ ++PK N  NK T        +   + +   Q+L V+QK +E+
Sbjct: 531 YAYKLAYEIADELQEISQVPKSNTLNKFTILARVLRTMHYQDIYDVCQKLFVSQKEREE 589


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.1 bits (57), Expect = 0.44
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 20   QIQNYTQKLAKDTSSLL--MELMRMPKDNAANKLTRERLSDEYIATLNSFQATQRLVAQK 77
            QI+     LAK+  S L  +E ++ P   A  KL  +R++++  +T   F+A  R  A+K
Sbjct: 998  QIKKSGDSLAKELQSKLDTLEKIQTPNMKAMQKL--DRVTEKIQSTNEEFEAA-RKKAKK 1054

Query: 78   TKEDVKKAK 86
             K   +K K
Sbjct: 1055 AKAAFEKVK 1063


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 163 EVVDSIESSVEYTAQNVESATQQLREAGNYKNKLRKKKV 201
           +  DS  +  +   +NV+  T+Q+ E  N K K+ + K+
Sbjct: 864 QAFDSSSTKADAMQKNVDRYTEQINEITNSKVKVLQTKI 902


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 146 TVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNVESATQQLREAGNYKNK 195
           T  D  +E+  M H   E+  +   SVE   + +    Q+LR    Y+ +
Sbjct: 261 TTGDAAEEIDLMGHTVEELAAAANVSVEVIKEAIRVRQQELRAQKQYEKQ 310


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1248

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 5    LQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDNAANKLTRERLSDEYIATL 64
            + + ++ +  R ++ + +   Q+ A+D+ ++ +    +P D    +  R  L+ E  A +
Sbjct: 1183 VSSAEELERRRREMERTRRQRQRRARDSQAITIHFSPLPSDEIQER--RSTLTAEEEAAI 1240

Query: 65   NSFQAT 70
             S QAT
Sbjct: 1241 -SMQAT 1245


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 146  TVNDIFKELSTMIHAQGEVVDSIESSVEYTAQNV 179
            T+N+I +EL   +    +++D+ + S E T   +
Sbjct: 1101 TLNEILRELEARLQEVQKLLDNADQSQEVTNHKI 1134


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.123    0.315 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,305
Number of Sequences: 2123
Number of extensions: 4399
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 221
length of database: 516,269
effective HSP length: 62
effective length of query: 159
effective length of database: 384,643
effective search space: 61158237
effective search space used: 61158237
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)