GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000617-TA|BGIBMGA000617-PA|IPR000727|Target SNARE
coiled-coil region, IPR010989|t-snare, IPR006012|Syntaxin/epimorphin
family
         (221 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 2   VNQLQTPQDSQELRAQLRQIQNYTQKLAKDTSSLLMELMRMPKDN 46
           +N+ +   ++++L    +   NY  K  KD +   +E+   PK N
Sbjct: 438 INEEKRTIENEQLNRMYKSYPNYIDKETKDMN---LEISTRPKSN 479


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 2   VNQLQTPQDSQELRAQLRQIQNYTQKL 28
           +N L  P D+QE + Q+  + + T ++
Sbjct: 165 MNFLIYPHDTQECKLQMESLSHTTDEM 191


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.123    0.315 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,993
Number of Sequences: 429
Number of extensions: 1304
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 221
length of database: 140,377
effective HSP length: 55
effective length of query: 166
effective length of database: 116,782
effective search space: 19385812
effective search space used: 19385812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)