GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000616-TA|BGIBMGA000616-PA|undefined
         (144 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      31   0.004
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      31   0.004
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   10.0 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   10.0 

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 31.1 bits (67), Expect = 0.004
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 85  PLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEYLELQK 139
           PL+LT   I+K+PI  VAP+   E  ++ +HE DLP  +S +   ++ + L+L K
Sbjct: 265 PLNLT---IKKMPIAIVAPFTIVE-PKLNKHE-DLPQDLSMKLSKNNDQCLDLSK 314


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 31.1 bits (67), Expect = 0.004
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 85  PLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEYLELQK 139
           PL+LT   I+K+PI  VAP+   E  ++ +HE DLP  +S +   ++ + L+L K
Sbjct: 157 PLNLT---IKKMPIAIVAPFTIVE-PKLNKHE-DLPQDLSMKLSKNNDQCLDLSK 206


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 124 SRQPLTSSQEYLELQKRESDI 144
           S  PLT+ ++Y+E+  R  DI
Sbjct: 430 SWSPLTNPKQYMEIFARWKDI 450


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 17  KSINPIISKVGDFTPFYIAIAISSVILGFLLILNIVCCC 55
           KS+  +++    +      + I + + G+ +IL I  CC
Sbjct: 215 KSVEELMNIANYYRILGDTVEIFNSLFGYQIILVIFDCC 253


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 13  NGTYKSINPIISKVGDFTPFYIAIAISSVILGFLLI 48
           NG Y+     ISK    +P +I I ++   + + +I
Sbjct: 482 NGMYRPSIYFISKTLAESPIFIIIPVTLTSVCYFMI 517


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,741
Number of Sequences: 317
Number of extensions: 1583
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 114,650
effective HSP length: 51
effective length of query: 93
effective length of database: 98,483
effective search space:  9158919
effective search space used:  9158919
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)