GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000616-TA|BGIBMGA000616-PA|undefined
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    28   0.49 
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   0.85 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   0.85 
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   2.6  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   2.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   3.4  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    24   7.9  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    24   7.9  

>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 100 FVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEYLELQKRESD 143
           F+ PY  D Y  V+  + ++  +++   + S++ ++E  K  SD
Sbjct: 259 FIVPYTEDTYILVVIADPEIESAVTLMNIQSARRFIEASKSASD 302


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 5   EPIDLFTGNGTYKSI--NPIISKVGDFTPFYIAIAISSVILGFLLILNIVCCCSRYSDYW 62
           EP     G   Y+S+  N +I +VGD     +    SS  LG +        C  Y    
Sbjct: 43  EPFQKEAGRSYYRSLKKNDVIYRVGD--DITVHDGDSSFYLGVI--------CKLYEKA- 91

Query: 63  LDRHTGNRWIVSIW 76
           +D+H+G +++ +IW
Sbjct: 92  IDKHSGKKYVEAIW 105


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 39  SSVILGFLLILNIVCCCSRYSDYW 62
           S+V L F  I+ +VC  S YS +W
Sbjct: 462 SAVCLRFYFIILVVCIASLYSAFW 485


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 7  IDLFTGNGTYKSINPIISKVG 27
          +D+  GNG Y+ +NP +  +G
Sbjct: 46 VDIGCGNGKYQKVNPNVYMIG 66


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 84  PPLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPL 128
           P  +L  L  EKL     AP +S  + EVL  E +L P++ R P+
Sbjct: 117 PSQELFPLEEEKL----YAPENSPGFVEVLEGEIELLPNLPRTPI 157


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 104 YHSDEYHEVLRHESDLPPSISRQPLTSSQEYLELQKRES 142
           Y +   +E L   S++  S   +P+T SQ Y  + +  S
Sbjct: 135 YENSSKNEYLDFNSEISASPVNEPMTHSQSYTSIDRLNS 173


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 120 PPSISRQPLTSSQEYLEL 137
           P S+  +P TS+QEYL++
Sbjct: 191 PASLITEPETSNQEYLQM 208


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 31  PFYIAIAISSVILGFLLILNIVCCCSRYSDYWLDRHTGNR---WIVSIWSTTPHKQPPL 86
           P+Y  I + ++    LL  N+    + Y + W     G+R   WIV   S    K+ P+
Sbjct: 389 PYYAKINVETLNESVLLENNVGLSPTSYEEIWFPGTHGHRIHAWIVKPESFDKSKKYPV 447


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 753,841
Number of Sequences: 5004
Number of extensions: 31664
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 8
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)