GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000616-TA|BGIBMGA000616-PA|undefined
         (144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    28   2.6  
12_02_0658 + 21608474-21609401,21609996-21610012                       27   4.5  
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486...    27   7.9  
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    27   7.9  
02_05_1190 + 34852467-34852745,34852871-34852989,34853795-34854290     27   7.9  
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    27   7.9  

>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 60   DYWLDRHTGNRWIVSIWSTT---PHKQPPLDLTELNIEKLPIQFVAP--YHSDEYHEVLR 114
            D W+    G+ W+++ W  T    H +    L E+  E+L   F     YHS  Y+  + 
Sbjct: 1220 DRWVTEPLGDSWLLATWRATWYITHYREKRMLVEM--EELLCFFTVEHHYHSFAYNRKVI 1277

Query: 115  HESDLPPSISRQPLTSSQEYLEL 137
            H +    S+  +P+   Q ++ L
Sbjct: 1278 HNTH---SVGMKPIAIGQSFVLL 1297


>12_02_0658 + 21608474-21609401,21609996-21610012
          Length = 314

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 62 WLDRHTGNRWIV-SIWSTTPHKQPPLDLTELNIEKL 96
          WL    G RW   ++W   P + PP+++  +N  +L
Sbjct: 17 WLLDDAGGRWTTKTVWMDDPRRPPPVEI-PINARRL 51


>12_02_0483 +
           19546295-19546397,19547163-19547482,19547606-19548611,
           19549890-19549985,19550500-19551551
          Length = 858

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 72  IVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEYH---EVLRHESDLPPSISRQPL 128
           I  I+      +P +   ++N+ +L + FV     DE+    E+LR E  LP +      
Sbjct: 28  IKEIYHVDNSDEPSISDFDINVIELDVGFVIAIEEDEFEIDKELLRREIRLPKN-----R 82

Query: 129 TSSQEYLE 136
           T ++ YLE
Sbjct: 83  TKTKRYLE 90


>08_02_1416 -
           26915306-26915459,26915553-26915668,26915798-26915910,
           26915995-26916130,26916219-26916338,26916472-26916648,
           26916790-26916862,26916948-26917083,26917179-26918055,
           26918138-26918331,26918438-26918620,26918730-26918796,
           26918900-26919092,26919317-26919363,26919478-26919574,
           26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 86  LDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEY 134
           L+L EL    + +  ++ Y+   Y E+       PP  S +P   + +Y
Sbjct: 148 LELKELQANVVHLSLLSRYYKRAYQELFLLNDAKPPENSAEPNAQASDY 196


>02_05_1190 + 34852467-34852745,34852871-34852989,34853795-34854290
          Length = 297

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)

Query: 57  RYSDYWLDRHTGN-------RWIVSIWSTTPHKQPPLDLTE 90
           R    WLDR TG        R +V IW  TPH    + LT+
Sbjct: 91  RLMSMWLDRETGAKCYMLSARSLVIIWGDTPHYWRWIPLTD 131


>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
            1279204-1279336,1279425-1279551,1279788-1280284,
            1280578-1280642,1280722-1280823,1281020-1281162,
            1281761-1281816,1282214-1282869,1282975-1283165,
            1283280-1283574,1283738-1283778,1284082-1284104,
            1284173-1284369,1284472-1284581,1285309-1285639,
            1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 81   HKQPPLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEYLEL 137
            H    L+ +ELN  K     +  Y S E    ++  S+LP  + R P+  + E +EL
Sbjct: 1355 HLSGKLNFSELNARKNSTVELQ-YSSRELEFYIQRLSNLPKLLDRNPVIMTDEIVEL 1410


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,675,248
Number of Sequences: 37544
Number of extensions: 190214
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)