GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000616-TA|BGIBMGA000616-PA|undefined
         (144 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               29   1.1  
SB_21339| Best HMM Match : EGF (HMM E-Value=0.12)                      29   1.1  
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   3.4  
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   3.4  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   6.0  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    27   7.9  
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)           27   7.9  

>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 72  IVSIWSTTPHKQPPLDLTELNIEKL 96
           ++SIWS  PH++  +D T+ N EK+
Sbjct: 236 LISIWSARPHQKTSVDGTDDNEEKI 260


>SB_21339| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 186

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 26 VGDFTPFYIAIAISSVILGFLLILNIVCCCSRYSDY 61
          VG      I  A  +VI   L++L   CCCSR S Y
Sbjct: 63 VGVLPGIVIIAACGAVIFVLLVLLIWCCCCSRRSSY 98


>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 82  KQPPLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSI 123
           K P  D  +LN+     + V  Y S++  E + H+S+LP +I
Sbjct: 600 KLPKSDCNQLNLLNTTARPVVTYSSNDALEWMTHQSELPGNI 641


>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1050

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 10  FTGNGTYKSINPIISKVGDFTPFYIAIAISSVILGFLLILNIV-CCCSR 57
           ++G+G      P+  + G  T   IAI + + I G +L+  ++ CCC R
Sbjct: 928 YSGDGKACEPVPVPGESGLSTKELIAIIVCACIAGLILLSIMIWCCCFR 976


>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 868

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 10  FTGNGTYKSINPIISKVGDFTPFYIAIAISSVILGFLLILNIV-CCCSR 57
           ++G+G      P+  + G  T   IAI + + I G +L+  ++ CCC R
Sbjct: 746 YSGDGKACEPVPVPGESGLSTKELIAIIVCACIAGLILLSIMIWCCCFR 794


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 7  IDLFTGNGTYKSINPIISKVGDFTP 31
          I L+TG G Y S+N +   VG F P
Sbjct: 23 ISLYTGLGKYLSVNNLTKPVGIFIP 47


>SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 456

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 34 IAIAISSVILGFLLILNIVCCCSR 57
          I IAISSV LG ++++ I+C C R
Sbjct: 7  IVIAISSV-LGLVILIAILCLCIR 29


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 103 PYHSDEYHEVLRHESDLPPSISRQPLTSS 131
           PYH  +YH++L   S   PS S   L S+
Sbjct: 950 PYHHHQYHQLLISSSLSTPSTSSSLLAST 978


>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 108 EYHEVLRHESDLPPSISRQPLTSSQEYLELQKRESDI 144
           E  ++L     LPP +  Q + + + Y ELQ++ +D+
Sbjct: 80  EERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDL 116


>SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)
          Length = 835

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 24  SKVGDFTPFYIAIAISSVILGF--LLILNIVCCCSRYSDY 61
           S+ GD++ F++   +++V+L    L+ LN+     +Y  Y
Sbjct: 594 SQFGDWSQFFLFACVAAVVLSIAGLMTLNLTLSVKQYRSY 633


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,356,513
Number of Sequences: 59808
Number of extensions: 219766
Number of successful extensions: 650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 11
length of query: 144
length of database: 16,821,457
effective HSP length: 76
effective length of query: 68
effective length of database: 12,276,049
effective search space: 834771332
effective search space used: 834771332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)