GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000616-TA|BGIBMGA000616-PA|undefined
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   2.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   2.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   2.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.0  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 13  NGTYKSINPIISKVGDFTP 31
           NG   S+N I  KVGD  P
Sbjct: 84  NGVPSSLNVISKKVGDGGP 102


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 13  NGTYKSINPIISKVGDFTP 31
           NG   S+N I  KVGD  P
Sbjct: 84  NGVPSSLNVISKKVGDGGP 102


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 13  NGTYKSINPIISKVGDFTP 31
           NG   S+N I  KVGD  P
Sbjct: 84  NGVPSSLNVISKKVGDGGP 102


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 91  LNIEKLPIQFVAPYHSDEY 109
           +NIE++P+    P H   +
Sbjct: 337 INIEQIPVPVPVPIHCGNF 355


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 95  KLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQE 133
           K PI+F    +  +Y +V   ++D   S    P+T+ ++
Sbjct: 590 KNPIEFTDLSNERKYEDVCVLKTDTNQSCPSPPVTTKRD 628


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 102 APYHSDEYHEVLRHESDLPPSIS 124
           AP+H+     V   ESD  P ++
Sbjct: 284 APFHTQRLLYVYAQESDYYPDLN 306


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 128 LTSSQEYLELQKRESDI 144
           LT SQE  + Q+RES++
Sbjct: 455 LTYSQEIGDRQERESEL 471


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,818
Number of Sequences: 429
Number of extensions: 2094
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)