GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000616-TA|BGIBMGA000616-PA|undefined
         (144 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11480.1 68417.m01846 protein kinase family protein contains ...    29   1.6  
At1g51940.1 68414.m05855 protein kinase family protein / peptido...    28   2.8  
At5g23990.1 68418.m02819 ferric-chelate reductase, putative simi...    27   4.9  
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi...    27   4.9  
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00...    27   4.9  
At1g43870.1 68414.m05054 hypothetical protein similar to fructos...    27   6.5  
At5g07360.1 68418.m00840 amidase family protein low similarity t...    26   8.6  
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea...    26   8.6  
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    26   8.6  

>At4g11480.1 68417.m01846 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 656

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 10  FTGNGTYKSINPIISKVGDFTPFYIA---IAISSVILGF-LLILNIVCCCSRYSDYWLDR 65
           F  + T  +   ++   G   P Y+     +  S +  F +LIL IVC     S Y +D 
Sbjct: 479 FRVDQTEDNTRRVVGTFGYMPPEYVTHGQFSTKSDVYSFGVLILEIVCGKKNSSFYKIDD 538

Query: 66  HTGNRWIVSIWSTTPHKQPPLDLTELNIEK 95
             GN  +  +W    +   PLDL +  IE+
Sbjct: 539 SGGN-LVTHVWRLW-NNDSPLDLIDPAIEE 566


>At1g51940.1 68414.m05855 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           contains protein kinases ATP-binding region signature,
           PROSITE:PS00107
          Length = 651

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 9   LFTGNGTYKSINPIISKVGDFTPFYIAIAISSVILGFLLILNIVCCCSRYSDYWLDRHTG 68
           L  GN +   +N   +K G   P+   +    V+L  L++  +VC C R S        G
Sbjct: 214 LANGNISDDQVNHT-AKSGSHVPYIWIVGGLGVVLALLVLCILVCICLRSSSCSSSEEDG 272

Query: 69  N 69
           N
Sbjct: 273 N 273


>At5g23990.1 68418.m02819 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 657

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 20  NPIISKVGDFTPFYIAIAISSVILGFLLILNIVCCCSRYSDYWLDRHTGN 69
           +PI   +G     ++ + I S  + FLL++ IV   +RY  Y +D +TG+
Sbjct: 473 SPISPVLGPNNFLWLGVVILSSFVMFLLLIGIV---TRYYIYPVDHNTGS 519


>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 699

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 20  NPIISKVGDFTPFYIAIAISSVILGFLLILNIVCCCSRYSDYWLDRHTGN 69
           +PI   +G     ++ + I S  + FLL++ IV   +RY  Y +D +TG+
Sbjct: 515 SPISPVLGPNNFLWLGVVILSSFVMFLLLIGIV---TRYYIYPVDHNTGS 561


>At2g16290.1 68415.m01865 F-box family protein contains Pfam
           PF00646: F-box domain;
          Length = 415

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 76  WSTTPHKQPP----LDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPLTSS 131
           +S  P  QPP    +D T  NI    ++F  PY  D     +R      P +   PL+S+
Sbjct: 63  FSDQPTDQPPFKSSVDCTLKNIPIYLVKFWTPYGDDYLIAEMREREGGEPKLLLSPLSSN 122

Query: 132 Q 132
           +
Sbjct: 123 R 123


>At1g43870.1 68414.m05054 hypothetical protein similar to fructose
           binding protein FrcB (GI:11066207)[Sinorhizobium
           meliloti]
          Length = 295

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 32  FYIAIAISSVILGFLLILNIVCCCSRYSDYWLDRHT-GN---RWIVSIWSTTPHKQPPLD 87
           +YI+    S++LG L         S+Y  + +DRH+ GN     I   WST   +   + 
Sbjct: 185 YYISARPRSLVLGGLKACRDTNWRSKYFFFRVDRHSIGNFDPARITRTWSTNLARTKKVT 244

Query: 88  LTELNIEKLPI 98
           L+E  ++ L +
Sbjct: 245 LSETELDLLTL 255


>At5g07360.1 68418.m00840 amidase family protein low similarity to
           enantiomerase-selective amidase [Rhodococcus sp.]
           GI:152052; contains Pfam profile PF01425: Amidase
          Length = 659

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 44  GFLLILNIVCCCSRYSDYWLDRHTGNRWIVSIWST 78
           G +L+  +V     Y D W    T N W +  +ST
Sbjct: 312 GAVLVAKLVTGSMAYDDIWFGGRTRNPWNIEEFST 346


>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1344

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 77  STTPHKQPPLDLTEL-----NIEKLPIQFVAPYHSDEYHEVLRHESDLPPSISRQPLTSS 131
           +T PH  PP DL  L     N    P     P      H     +   PP IS QP   +
Sbjct: 7   NTNPHNTPPFDLGILFKPSSNPYPPPAASYPPPTGPFLHNQYDQQHYAPPGISAQPSPVT 66

Query: 132 QE 133
           Q+
Sbjct: 67  QQ 68


>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1322

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 77  STTPHKQPPLDL-TELNIEKLPI-QFVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEY 134
           +T PH  PP DL T       P      P+ +++Y++ L      PP I+ QP   +Q  
Sbjct: 7   NTNPHNPPPFDLGTIFKPSSNPYPPPTGPFLNNQYNQQLY----APPGIAAQPSPVNQTQ 62

Query: 135 LELQKRES 142
            ++    S
Sbjct: 63  QDVSSSSS 70


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,830,091
Number of Sequences: 28952
Number of extensions: 159777
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 9
length of query: 144
length of database: 12,070,560
effective HSP length: 75
effective length of query: 69
effective length of database: 9,899,160
effective search space: 683042040
effective search space used: 683042040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)