GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000615-TA|BGIBMGA000615-PA|IPR003104|Actin-binding FH2
         (1199 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    27   0.77 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    27   0.77 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    27   1.0  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 955  LLYHICEMIIEKFPDSTDFFSEVGPVIRASKVDFDILSVNLQKLESDCKASWDHMKRVA 1013
            L++    M+I+ F      F     +I  +++DFD+ S  + ++  D   S D +K VA
Sbjct: 1288 LIFFALLMVIQFFAMMIHRFGTFSQIITKTQLDFDLCSKPIDEMTVDELRSRDPIKIVA 1346


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 955  LLYHICEMIIEKFPDSTDFFSEVGPVIRASKVDFDILSVNLQKLESDCKASWDHMKRVA 1013
            L++    M+I+ F      F     +I  +++DFD+ S  + ++  D   S D +K VA
Sbjct: 1288 LIFFALLMVIQFFAMMIHRFGTFSQIITKTQLDFDLCSKPIDEMTVDELRSRDPIKIVA 1346


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
            5-like protein protein.
          Length = 162

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 1142 SLTEGRRKSQASTNRMLVNGDLSADDEIIESLVRS 1176
            SLTEG+R  ++       NGD S  D+  ESL  S
Sbjct: 70   SLTEGKRSKRSKRPNGDTNGDTSQVDDQNESLEAS 104


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,743
Number of Sequences: 317
Number of extensions: 9798
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 1199
length of database: 114,650
effective HSP length: 65
effective length of query: 1134
effective length of database: 94,045
effective search space: 106647030
effective search space used: 106647030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)