Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000615-TA|BGIBMGA000615-PA|IPR003104|Actin-binding FH2
(1199 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 52 4e-07
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 49 3e-06
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 35 0.078
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 33 0.32
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 31 0.73
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 31 0.97
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 31 1.3
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 30 2.2
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 30 2.2
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 30 2.2
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 29 3.0
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 29 5.2
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo... 29 5.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 5.2
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 6.8
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 28 6.8
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 28 6.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 28 6.8
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 28 6.8
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 9.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 28 9.0
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 28 9.0
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 28 9.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 9.0
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 52.4 bits (120), Expect = 4e-07
Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 16/209 (7%)
Query: 907 LKVNKTFKVILSTLRSVGNFLNG--SHVKGFRLEYLSKVMEVKDTVHKHPLLYHICEMII 964
L+ +K FK +L + +GN++N KGF + L ++ +K+ + LL HI ++ I
Sbjct: 1184 LRDSKVFKGLLYLILYLGNYMNDYVRQAKGFAIGSLQRLPLIKNANNTKSLL-HILDITI 1242
Query: 965 EK-FPDSTDFFSEVGPVIRASKVDFDILSV-------NLQKLESDCKASWDHMKRVAKHD 1016
K FP +F E+ V A+K++ + + Q L+ DC S H
Sbjct: 1243 RKHFPQFDNFSPELSTVTEAAKLNIEAIEQECSELIRGCQNLQIDCD-SGALSDPTVFHP 1301
Query: 1017 SSQIFKTKINEFLTDAAQRIILLSVIKKRVMSRFGKLLLRFGVPPSDIAKTKPSEFLKVI 1076
+I I +L + +++ L + + + + FG P+D + F K +
Sbjct: 1302 DDKILSV-ILPWLMEGTKKMDFLKEHLRTMNTTLNNAMRYFGEQPND--PNSKNLFFKRV 1358
Query: 1077 AEFALEYRTTR-ERVQQQMEKRANHRERN 1104
F ++Y R + ++ + E+ + HR N
Sbjct: 1359 DSFIIDYSKARSDNLKSEEEEASQHRRLN 1387
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 907 LKVNKTFKVILSTLRSVGNFLNGS--HVKGFRLEYLSKVMEVKDTVHKHPLLYHICEMII 964
LK + FK L+ + +GNF+N + KG+RLE L + +K+ LL+ I +++
Sbjct: 1070 LKSSLHFKYFLNLVLHIGNFMNDAPRRAKGYRLESLLRASMIKNDKTGLTLLHTIEKIVR 1129
Query: 965 EKFPDSTDFFSEVGPVIRASKVDFDILSVNLQKLESDCKASWDHMKRVAKHDSSQ 1019
FP F ++ + S+ NL++LE DC + MK V K S++
Sbjct: 1130 THFPQLEAFLVDLKAIPEISRF-------NLEQLEQDCNDICERMKNVEKDFSNE 1177
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 34.7 bits (76), Expect = 0.078
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 199 SKFRHVVKTALKLLLVFVEYTEKNCLLLIDAIIAVDGSAGYQPWHNIMKILQDFDASDTE 258
SK H++K + KL + E+NCLL+ D D + HN K ++F S E
Sbjct: 703 SKDAHILKVSNKLRKQILHLVEQNCLLIFDLHNGTDDTIVKS--HNFQKFEEEFGNSRKE 760
Query: 259 LLIYATTL 266
L Y ++
Sbjct: 761 WLQYLASV 768
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 578 EEKPLRVSEMAGIVSKAKEELAKSQSKEVIKSPTIEKSQKVHEIKVSEND 627
EEK LR+S +A S EEL ++ SP ++ S ++ VSEND
Sbjct: 66 EEKKLRISRLANKESSRNEELL---TETTTPSPAVKASPASTKLSVSEND 112
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/100 (17%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 527 SVSAVDALAAMRQKQLDSTPEAKDDRGIIINREHSIKDL-AQRLTSPVSPTTEEKPLRVS 585
+V V +L + K +D ++ + + E +++ +R+ + +EE ++
Sbjct: 105 NVRPVKSLDGAKGKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIG 164
Query: 586 EMAGIVSKAKEELAKSQSKEVIKSPTIEKSQKVHEIKVSE 625
+MA ++K+++++ +S + + K P + K + + V++
Sbjct: 165 KMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTD 204
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 300 MTKQGTDLDLLRQLQIFEAVLLYEDGDESGTALQQLDESVISLVRRRSLNLNTSEMRKSK 359
M + DL+ L +IFE V L E ++ T +Q V+ ++ NLN +
Sbjct: 2 MADESFDLESLGSDEIFEGVNLDELEQQAQTQVQAQSSQVVVPSEKQKQNLNLPNSYTNS 61
Query: 360 KQQMRE 365
Q++RE
Sbjct: 62 SQKVRE 67
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 467 SNGSLNGNHYANGVNGHLDDEEPYANRTTRSLNQTDALKNGNQRYTAGLKQRI 519
SNG+ NG++ A G D+ + N T +++ T A + Q T ++ I
Sbjct: 776 SNGNANGDNTATNSQGATDNGQTTTNTTQNNVDNTQATTDNTQANTDNMQVAI 828
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/93 (26%), Positives = 39/93 (41%)
Query: 120 ELRRALFSLKQILQSDKDLVHEFVANKGLDCLMQVSNMADHNYLDYILRALGQILLYVDG 179
EL L+QI+ + L+H+ V N G + L V++ + + I+
Sbjct: 691 ELHETKAGLQQIIIENGGLIHQGVGNFGKERLFLVADRVSTRVSIERSKNMCTIIRSQWV 750
Query: 180 MHGVMGHEGCIQWLYSLISSKFRHVVKTALKLL 212
M V QW Y L S ++ KTAL+ L
Sbjct: 751 MDSVNNQRLMPQWSYLLFSKDEKYSWKTALESL 783
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 516 KQRIQNGTLGHSVSAVDA-LAAMRQKQLDSTPEAKDDRGIIINREHSIKDLAQRLTSPVS 574
KQ+I + + H + D L ++K++++ + + ++N I + S VS
Sbjct: 813 KQKIASQVMKHGLKPEDLKLPPSKKKKIENLSTVQKPKDSVVNTPDVIMSSVDEIPSSVS 872
Query: 575 PTTEEKPLRVSEMAGIVSKAKEELAKSQSKEVIKS-PTIEKSQKVHEIKVSE 625
P T +++ G ++KA+EE + K I + ++ ++V IK S+
Sbjct: 873 PGT------IAKEEG-MAKAREEAIANPLKYAIDAFVAVDHEEEVSAIKSSQ 917
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1112 IDVGNYSNKNGDHTADHALKELLKTDPDTDSLTEGRRKSQASTNRMLVNGDLSADDEI 1169
+D G+ N N T LK L PD D T+G+ ASTN +L+ DL +++
Sbjct: 1 MDSGSRVNVNIQGT--RVLKNKLGKIPDIDISTDGKYLLSASTNDVLLVWDLHTSNKV 56
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 897 LMDLKQGIELLKVNKTFKVILSTLRSVGNFLNGSHVKGFRLEYLSKVMEVKDTVHKHPLL 956
L + Q +EL + +VIL+T G G H+ RL + + V +T P
Sbjct: 101 LRNFVQALELTSIQTLRRVILTT----GLKFYGLHLGEVRLPMIETDIRVPETFSGTPNF 156
Query: 957 YHICEMIIEKF 967
Y++ E I+++F
Sbjct: 157 YYVQEDILKEF 167
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 829 IEKLLTMLPTEEEKVKIQEAQYANPDLPLGSAEQFLLTLASINELSSRLKLWV--FKLDF 886
+E+L T + E +++ + Q A + A Q ++ N+ + K V +L
Sbjct: 442 LEQLATTIRRLEAELQTTKQQVAQLIIQRDQARQEIVDAYVNNDANEDSKKQVEELRLQL 501
Query: 887 DNLEKEIAEPLMDLKQ 902
NLEKE A L+ LKQ
Sbjct: 502 QNLEKEHASTLVTLKQ 517
>SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 1084 RTTRERVQQQMEKRANHRERNKTRGKMIIDVGNYSNKNGDHTADHALKELLKTDPDTDSL 1143
R + ++QQM HR +N++R K I V N + A E +T D
Sbjct: 111 RAKIDHLEQQMHTVGAHRNKNESR-KHTIFVDNVKEAKSFNPA-----EFFQTTDDLVGR 164
Query: 1144 TEGRRKSQASTNRMLVNGDLS 1164
TE R K N L N S
Sbjct: 165 TENRVKKDQIENNELTNQPFS 185
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 5.2
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 829 IEKLLTMLPTEEEKVKIQEAQYANPDLPLGSAEQFLLT-LASINELSSRLKLWVFKLDFD 887
I K L ++ ++++++ A + + L L T L + E S L + D D
Sbjct: 628 ITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEE--SNKSLIKKQEDVD 685
Query: 888 NLEKEIAEPLMDLKQGIELLKVNKTFKVILSTLRSVGNFLNGSH--VKGFRLEYLSKVME 945
+LEK I DL++ E L+ + K+ LR V + L G H ++ R + S + +
Sbjct: 686 SLEKNIQTLKEDLRKSEEALRFS---KLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSD 742
Query: 946 VKDT 949
K+T
Sbjct: 743 AKNT 746
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 1042 IKKRVMSRFGKLLLRFGVPPSDIAKTKPSEFLKVIAEFALEYRTTRERVQQQMEKRANHR 1101
+KK+ + ++ K ++R S K E ++++E ++ RTT +++Q+E N
Sbjct: 13 LKKKQIRQY-KEIIRISKAQSIRIKELQLENERLLSE-NIDLRTTAINLEEQLETVQNEN 70
Query: 1102 ERNKTR 1107
E NKT+
Sbjct: 71 EENKTK 76
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 88 ILDNRKNALVLRTQLSVRVHSIMERLLHSQGRELRRALFSLKQILQSDKDLVHEF---VA 144
++D K L L++ S+R+HSI+E + L R K ++Q++K +E +
Sbjct: 618 LIDKSKYDLALQSLQSLRLHSILEDEVERFNEYLTRL---KKDVMQNNKPKENELINKIR 674
Query: 145 NKGLDCLM 152
+ GLD ++
Sbjct: 675 SSGLDIIL 682
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 614 KSQKVHEIKVSENDIHWEELKKGCLNREFHLCDLDFSDLRHDSEDD 659
+ Q + ++ +EN++H LN++ L +++ S L H E +
Sbjct: 11 EDQDAYSVRENENELHINNSGMSELNKKLQLPNVELSTLSHTQEQE 56
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 915 VILSTLRS-VGNFLNGSHVKGFRLEYLSKVME--VKDTVHKHPLLYHICEMIIEKFPDST 971
V L L+S VGN + V G R +L K+ V KH L H+ +++ P +T
Sbjct: 233 VFLDLLKSKVGNSIYSQLVDGGRKLFLPKLRNWFVSAIRSKHDELIHLILLVLANLPLTT 292
Query: 972 DFFSEV 977
+ +EV
Sbjct: 293 EKLAEV 298
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 28.3 bits (60), Expect = 6.8
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 518 RIQNGTLGHSVSAVDALAAMRQKQLDSTPEAKDDRGIIINREHSIKDLA-----QRLTSP 572
R+Q ++ S +D L M + E D+ I +N+ S+K A +R
Sbjct: 717 RLQKRSITEYPSQLDPLF-MVELPTPIRNEVNDNHEIAMNKRLSLKSHADNKIDERGKKK 775
Query: 573 VSPTTE-EKPLRVSEMAGIVSKAK------EELAKSQSKEVIKSPTIEKSQKVHEIKVSE 625
+ +K L++S+ + ++K +EL K K+++K ++KS + E+K+ +
Sbjct: 776 IRQENAFDKLLQISKKSKTINKPNVDYLTLKELPKDLQKQILKESNLQKSDLISEVKLEK 835
Query: 626 NDI 628
I
Sbjct: 836 PHI 838
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 61 VDYEDFAIPDMDPQEFSDKEDFQDPVEILDNRKNALVLRTQLSVRVH-----SIMERLLH 115
VD+E+ MD Q K+D D V + + + Q+++RV S +L
Sbjct: 801 VDHENINSNVMDEQGEKQKDDVVDMVRKITEKAQLFLSHEQITIRVEMLKLLSYGSNVLA 860
Query: 116 SQGRELRRALFSLKQILQSDKDLVHEFVANKGLDCLMQVSNMAD 159
+ A+ + ++ D +E + L+ + QV +AD
Sbjct: 861 KEPNTFYPAINTFWPLVVIQLDTDNELLVECALETIYQVCALAD 904
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 537 MRQKQLDSTPEAKDDRGIIINREHSI-KDLAQRLTSPVSPTTEEKPLRVSEMAGIVSKAK 595
+RQ+ L S ++ + + + K + +++P + EKP+ S+
Sbjct: 787 LRQESLPSQQSSESKQSTQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLS 846
Query: 596 EELAKSQSKEVIKSPTIEKSQKVHEIKVSENDIH 629
+Q+KE K +I + KVS ND H
Sbjct: 847 RNTDDTQAKEAPKEASIPDNASTASTKVS-NDSH 879
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 575 PTTEEKPLRVSEMAGIVSKAKEELAKSQSKEVIKSPTIEKSQKV 618
P TE++ R + A + K +LA ++KE + P ++K K+
Sbjct: 24 PKTEKELERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKKAKI 67
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 9.0
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 772 SRTNDL-IIKKLMEPKRNLILDA-----KRSNAINIAMKKLPTPQTIKAAIMKMDATVIG 825
++ ND+ ++K L+EP NL +DA + +AI + P T KA +K+
Sbjct: 122 AKINDVEVVKVLLEPDFNLNVDAICETLSKDSAIKVFFACSPGNPTAKA--LKL------ 173
Query: 826 REGIEKLLTMLPTEEEKVKIQEA--QYANPDLPLGSAEQFLLTLASINELSSRLKLWVFK 883
E I+K+L PT V + EA ++ PD+ + LA LS L +
Sbjct: 174 -EDIKKILEH-PTWNGIVVVDEAYIDFSAPDMSALTLVNEYPNLAVCQTLSKSFGLAGIR 231
Query: 884 LDFDNLEKEIAEPLMDLK 901
+ F K IA + LK
Sbjct: 232 IGFCLTSKPIATIMNSLK 249
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 257 TELLIYATTLINRCLNNVPDRDTYYDQVDALQDQGMDDIIQLYM 300
T+LL+ + + C+ +V D +++ + +LQD+ D++ L M
Sbjct: 838 TQLLVLLSQKYSTCIYDVTDENSHLKLISSLQDE-CSDVLYLLM 880
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,002,369
Number of Sequences: 5004
Number of extensions: 209408
Number of successful extensions: 693
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 43
length of query: 1199
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1118
effective length of database: 1,957,154
effective search space: 2188098172
effective search space used: 2188098172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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