GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000615-TA|BGIBMGA000615-PA|IPR003104|Actin-binding FH2
         (1199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    26   1.6  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   2.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   6.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 151 LMQVSNMADHNYLDYILRALGQILLYVDGMHGVMG 185
           L+ + N+ D  ++  +   LG I+ Y   +HGV+G
Sbjct: 82  LILLQNIIDICWITMVYSLLGIIIAYTGDVHGVIG 116


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
            determiner protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 8/47 (17%)

Query: 1082 EYRTTRERVQQQMEKRANHRERNKTR-------GKMIIDVGNYSNKN 1121
            EYR  RER +++   +   RER+K R          I ++ NY+N N
Sbjct: 55   EYRKYRERSKERSRDK-RERERSKERKIISSLSNNYISNISNYNNNN 100


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 465 NYSNGSLNGNHYANGVNGH 483
           NY+N + N N+Y N  N +
Sbjct: 332 NYNNNNYNNNNYNNNYNNN 350


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,280
Number of Sequences: 429
Number of extensions: 12525
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 4
length of query: 1199
length of database: 140,377
effective HSP length: 66
effective length of query: 1133
effective length of database: 112,063
effective search space: 126967379
effective search space used: 126967379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)