Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000614-TA|BGIBMGA000614-PA|undefined
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 37 0.006
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.071
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.50
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 31 0.50
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 30 0.67
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 30 0.88
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.88
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 29 1.2
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 27 4.7
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 4.7
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy... 27 8.2
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 27 8.2
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 8.2
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 37.1 bits (82), Expect = 0.006
Identities = 42/215 (19%), Positives = 76/215 (35%), Gaps = 5/215 (2%)
Query: 4 SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
SS + ++S + + ++ + S S DS+ ++ S + S
Sbjct: 114 SSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES 173
Query: 64 ELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSC--- 120
E S D S +D +S ++ + +++S + ++ S+S
Sbjct: 174 ESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSED 233
Query: 121 -DSSRWPENSNSESTSKDVSNLITEXXXXXXXXXXXXXXXDGLVRLKAIRSVDSGD-RSR 178
DSS +S SES+S+D + + + S DS D S
Sbjct: 234 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESE 293
Query: 179 WLESDSDKKFSPRNNHQSSSDKNIPKMIRHVESGE 213
DSD S ++ SSS ++ SGE
Sbjct: 294 SSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGE 328
Score = 27.9 bits (59), Expect = 3.5
Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 2/176 (1%)
Query: 27 KHSKSRDSNXXXXXXXXXXXXXXXEDENL-SKTHSKTQELSRTSADEISIPTDRSGRQTS 85
KH K+++S E S + + S +D S ++ S
Sbjct: 68 KHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDND 127
Query: 86 PHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSSRWPENSNSESTSKDVSNLITEX 145
+ ++ E+ S + + ++ S+ DSS +S SES+S+D + +
Sbjct: 128 SSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSS 187
Query: 146 XXXXXXXXXXXXXXDGLVRLKAIRSVDSGDRSRWLESDSDKKFSPRNNHQSSSDKN 201
++ S + D S S S+ + S +N SSS +
Sbjct: 188 DSESESSSEDSDSSSSSSDSESESSSEGSDSSS-SSSSSESESSSEDNDSSSSSSD 242
Score = 27.9 bits (59), Expect = 3.5
Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 4 SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
SS + ++S + S ++ + S S+DS+ ++ S++ S+
Sbjct: 240 SSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDS 299
Query: 64 ELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSC-DS 122
+ + +S+D S + G + T +G A+S + + K + S D
Sbjct: 300 DSTSSSSDSDSSSSSEDGNSNTD--TTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDK 357
Query: 123 SRWPENSNSESTSKDVSNLITE 144
S ++ + ES++ S+ T+
Sbjct: 358 SLKRKHEDDESSTSTKSSRTTK 379
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 33.5 bits (73), Expect = 0.071
Identities = 26/143 (18%), Positives = 59/143 (41%), Gaps = 1/143 (0%)
Query: 1 MEKSSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHS 60
+ +SIA + +TSS+ S S S+ + + S + S
Sbjct: 127 ISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186
Query: 61 KTQELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSC 120
K+ S +S+ S + S SP ++++ + SF I + P ++ +
Sbjct: 187 KSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSF-ITSTTPASSSSSGAIVSNA 245
Query: 121 DSSRWPENSNSESTSKDVSNLIT 143
++ ++S++ S + VS++++
Sbjct: 246 KTASTDDSSSASSATSSVSSVVS 268
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.50
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 3/124 (2%)
Query: 8 SNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQELSR 67
SN S TSS+ P + S SR + + H++ +
Sbjct: 1261 SNASPSPTSSSMASAAPA-RTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEGH--AD 1317
Query: 68 TSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSSRWPE 127
+S+ S+ S + HL++++ K ++ P F K + C S +W
Sbjct: 1318 SSSTRTSLAHQDSRKSLHRHLSRSSSRASKKPSIVSTTGPFNESFSAKPVEPCASEKWWL 1377
Query: 128 NSNS 131
NS +
Sbjct: 1378 NSTA 1381
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 55 LSKTHSKTQELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKS 99
L +T +K+ E ++++ ++ S P D S T P T+ + A++A S
Sbjct: 459 LRRTPAKSSEEAKSTTNDSSPPKDSSSTSTQP--TEQSNAQQAPS 501
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 30.7 bits (66), Expect = 0.50
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 54 NLSKTHSKTQELSR-TSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPV 108
N T ++TQ S T ++S SG+ SPH + G+ KS + +A +P+
Sbjct: 637 NRKATSNETQSSSNSTETSKLSKNVSESGKDKSPHWHSHGGSITGKSIVEQASSPL 692
Score = 29.1 bits (62), Expect = 1.5
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 249 ADEEKPWWLD-SNANIPEGIERLTPPRKSTSESDKNEKY--NFFKVRRIESGDQKDWWLT 305
+ + KP +D N+ +E ++T+ SD KY +R ++S + T
Sbjct: 585 SSQRKPLSVDPKQENVSSTVET-AKQAETTASSDSFRKYANTLNDLRHLKSSRNRK--AT 641
Query: 306 SNENSLSGNKLESHSLSK----SGSDRS 329
SNE S N E+ LSK SG D+S
Sbjct: 642 SNETQSSSNSTETSKLSKNVSESGKDKS 669
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 30.3 bits (65), Expect = 0.67
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 440 QKVDRYISRYTDIDDILGTSGQIYSP--FMDSILARRTGQTLLDEDVCEE 487
Q +DR I +YT +D +L G +Y+P F+ T +D D+CEE
Sbjct: 218 QDIDRCI-KYTGVDGVLSAEGSLYNPRIFLPPSSPLMTLYPRID-DMCEE 265
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.88
Identities = 25/104 (24%), Positives = 42/104 (40%)
Query: 257 LDSNANIPEGIERLTPPRKSTSESDKNEKYNFFKVRRIESGDQKDWWLTSNENSLSGNKL 316
L+S N P+ KS ES KNE F I + + SN + LS K+
Sbjct: 30 LNSFKNDPKKELNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKV 89
Query: 317 ESHSLSKSGSDRSFPLRRIRHIESGERPWWLSSDKNIPEGIDKL 360
E+ S + + + ++ P++ + +N P I+ L
Sbjct: 90 ENLSKLFNDINEDVSIEELKSRFKDHLPFYENYIRNHPLAIEAL 133
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.88
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 29 SKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQELSRTSADEISIPTDRSGRQTSPHL 88
S S ++ + S + S + S +S+ S + S +S
Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190
Query: 89 TQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSSRWPENSNSESTSKDVSNLIT 143
+ ++ + + S + P+T+ HS S SS +S+S S S+ IT
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS---SSSSSSSRPSSSSSFIT 242
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 419 GRTSPYENNRQCRRRSSANAFQKVDRYISRYTDIDDILGTSGQIYSPFMDS 469
G +SPY N Q ++ SS FQ ++++R +D SGQ Y+ DS
Sbjct: 440 GSSSPYVNGHQTQQISSLPPFQSQTQFLARNSD------NSGQSYNSEGDS 484
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 415 ENYRGRTSPYENNRQCRRRSSANAFQKVDRYISRYTDIDDILGTSGQIYSPFMDSILARR 474
EN G T Y N R + N F + + Y+D IL ++ P M S + +R
Sbjct: 277 ENNNG-TPCYNNYRSSKNTLPKNYFSILLSKLQPYSDFQIILDGMSRLLYPPMQSTIPKR 335
Query: 475 TGQTLLD 481
+ + D
Sbjct: 336 SSLIMFD 342
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 257 LDSNANIPEGIERLTPPRKSTSESDKN-EKYNFFKVRRIESGDQKDWWLTSNENS 310
+DS+ IP + ++ P S+ S N ++ + FK I LT+ ENS
Sbjct: 66 IDSSPKIPSAVPHISTPNPSSGASTPNIKRVSDFKFGEILGEGSYSTVLTATENS 120
>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 160 DGLVRLKAIRSVDSGDRSRWLESDSDKKFSPRNNHQSSSDKNIPKMI 206
+GL+ K V++ D L D K SP+NN SD++ P+ I
Sbjct: 208 NGLLSSKYFSRVETSDGEVLL----DAKASPKNNRSDESDQSDPESI 250
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 296 SGDQKD-WWLTSNENSLSGN-KLESHSLSKSGSDRSFPLRRIRHIESGERPWWLSSDKNI 353
+GD+ D WWL + L K + KS + + L + E ER W S+ + I
Sbjct: 450 AGDKADNWWLRHHPKVLGMQFKKSAKRPEKSNAIDLYVLDAVP-AEGSEREQWESAFETI 508
Query: 354 PEGIDK 359
PE + K
Sbjct: 509 PEPLTK 514
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 8.2
Identities = 51/219 (23%), Positives = 84/219 (38%), Gaps = 21/219 (9%)
Query: 127 ENSNSESTSKDVSNLITEXXXXXXXXXXXXXXXDGLVRLKAIRSVDSGDRSRWLESDSDK 186
+NSN EST+ D N++ E D L L+ D+ + DS+
Sbjct: 34 DNSNKESTNLDDLNML-EEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKESTNLDDSNM 92
Query: 187 KFSPRNNHQSS------SDKNIPKMIRHVESGER-AWWLDXXXXXXXXXXXXXXXXXXXP 239
P+++ S+ D N+ + +H +S + + LD P
Sbjct: 93 LEEPKHHDNSNKESTNLDDLNMSEEPKHHDSSNKESTNLDNSNMDESENQKNFKIEEPKP 152
Query: 240 NQAFKKY--KLADE---EKPWWLDSNANIPEGIERL----TPPRKSTSESDKNEKYNFFK 290
+ F+ K D+ EKP L N+ I E I R+ P T ++ ++N
Sbjct: 153 SGDFRNEGPKQCDDSKIEKP-ELHVNSKIEEPIHRIDSEHNEPEYHTESKNEESEHNTKS 211
Query: 291 VRR--IESGDQK-DWWLTSNENSLSGNKLESHSLSKSGS 326
+R I D K + + S G++ +SLSKS S
Sbjct: 212 IREEPIHHVDSKNEEPVYSKIPEKMGDEFSENSLSKSDS 250
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.127 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,222
Number of Sequences: 5004
Number of extensions: 92532
Number of successful extensions: 236
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 22
length of query: 511
length of database: 2,362,478
effective HSP length: 76
effective length of query: 435
effective length of database: 1,982,174
effective search space: 862245690
effective search space used: 862245690
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 56 (26.6 bits)
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