GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000614-TA|BGIBMGA000614-PA|undefined
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435...    33   0.72 
07_03_1139 + 24254662-24255306                                         31   1.7  
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    31   2.2  
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093...    29   6.7  
11_02_0068 + 7991816-7992603,7995209-7997177                           29   8.8  

>04_04_0179 -
           23342764-23342973,23343185-23343340,23343535-23343593,
           23344150-23344226,23344309-23344587,23344800-23344885,
           23344960-23345027,23345721-23345904,23346071-23346204,
           23346776-23347039,23347613-23347677,23347833-23348407,
           23348501-23348680,23348765-23348928,23349008-23349261,
           23349405-23349562,23349808-23349948,23350176-23350282,
           23350651-23350737,23350812-23350901,23350974-23351055,
           23351370-23351561,23351748-23351816,23351959-23352294,
           23352694-23352837,23352963-23353126,23353817-23353883
          Length = 1463

 Score = 32.7 bits (71), Expect = 0.72
 Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 5   SIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQE 64
           S+  ++++  T  + ++  PK++HS SR +                E EN S   S  + 
Sbjct: 804 SVERSENIDCTPVSRIEVPPKVQHSSSRKTPSSVLTAQSLRKFRDSE-ENRSAKPSVRES 862

Query: 65  LSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLF-KMKHSDSCDSS 123
           +++T  D  + P  +   QT+   T      EAK  + R ++ + N F   + +   +  
Sbjct: 863 MTKTRLDSATKPPQKE-EQTANKNTGTRVRSEAK--IPRNISDIENEFANSEPTFHSNRK 919

Query: 124 RW--PENSNSESTSKDVSNLITE 144
            W  P  S  +S S D+   + E
Sbjct: 920 AWKLPPQSTRQSQSIDLRASVRE 942


>07_03_1139 + 24254662-24255306
          Length = 214

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 382 PPSHVPPFPLHLPDDEPLGDRRSPEGLETPRENENYRGRTSPYENNRQCRRRSSANAF 439
           PP+H P     +P   PLG   SP  L T  EN      TSP       R  S A+AF
Sbjct: 151 PPAHRPDPATAVPHLPPLGRDPSPSPLPTAGENS-----TSPTPEREHHRGESPADAF 203


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 440 QKVDRYISRYTDIDDILGTSGQIYSPFMDSILARRTGQTLLDEDVCEEID 489
           +++++     T ++D + +S  +     D I+  +  Q  L+EDVC  +D
Sbjct: 314 KELEKIQKESTSLNDQIHSSSSMIIRLQDEIITMKNAQRRLEEDVCRHVD 363


>12_02_0693 -
           22207582-22207620,22208421-22208597,22209258-22209347,
           22210215-22210280,22210473-22210570,22210669-22210789,
           22210875-22212477,22213332-22213915
          Length = 925

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 380 YIPPSHVPPFPLHLPDDEPLGDRRSPEGLETPRENENYRGRTSPYENNRQCRRRSSAN 437
           +  P+  PP P   P   PL  ++ P G +  R+++NY  R++   N+     RSS+N
Sbjct: 377 FTQPTSAPP-PSRTPP--PLAVKQKPHGSQAKRKDDNYPRRSNQNHNH----HRSSSN 427


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 53  ENLSKTHSKTQELSRTSAD-EISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNL 111
           E L  T  + + L R   D  + +P + S       LT  +    +  FL + L  +TN+
Sbjct: 623 EELPSTIGRLKSLVRLFVDYHVKLPKEISNMHALEELTSFSALMYSPDFL-KELGQLTNM 681

Query: 112 FKMKHSDSCDSSRWPENSNSESTSKDVSNLIT 143
             ++    CDS +    S  E+ +  + NL T
Sbjct: 682 RVLRVICDCDSFKGDAGSCLENLASSLCNLGT 713


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,723
Number of Sequences: 37544
Number of extensions: 551120
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 6
length of query: 511
length of database: 14,793,348
effective HSP length: 85
effective length of query: 426
effective length of database: 11,602,108
effective search space: 4942498008
effective search space used: 4942498008
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 62 (29.1 bits)