GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000614-TA|BGIBMGA000614-PA|undefined
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   7e-04
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.14 
SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2)                   35   0.18 
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             31   1.7  
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.9  
SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)                  31   2.9  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     29   6.7  
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       29   8.9  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  29   8.9  

>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 42.7 bits (96), Expect = 7e-04
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 4/198 (2%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           SS ++N S   +SS++  N      S S  S+                  + S + S + 
Sbjct: 52  SSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSS 111

Query: 64  ELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSS 123
             S +S+   S  +  S   +S   + ++ +  + S    + +  ++     +S S  SS
Sbjct: 112 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSS 171

Query: 124 RWPENSNSESTSKDVSNLITEXXXXXXXXXXXXXXXDGLVRLKAIRSVDSGDRSRWLESD 183
               +S+S S+S   S+  +                       +  S  S   S    S 
Sbjct: 172 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SSSSSSSSNSSSSSSSSS 227

Query: 184 SDKKFSPRNNHQSSSDKN 201
           S    S  NN  SSS  +
Sbjct: 228 SSSSSSSSNNSSSSSSSS 245



 Score = 41.5 bits (93), Expect = 0.002
 Identities = 36/198 (18%), Positives = 67/198 (33%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           S+ +SN S   +SS+N  +      S S  S+                  + S + S + 
Sbjct: 55  SNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSS 114

Query: 64  ELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSS 123
             S +S+   S  +  S   +S   + ++ +  + S    + +  ++      S S  SS
Sbjct: 115 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSS 174

Query: 124 RWPENSNSESTSKDVSNLITEXXXXXXXXXXXXXXXDGLVRLKAIRSVDSGDRSRWLESD 183
               +S+S S+S   S+  +                          S  S   S    S 
Sbjct: 175 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSS 234

Query: 184 SDKKFSPRNNHQSSSDKN 201
           S+   S  ++  SSS  +
Sbjct: 235 SNNSSSSSSSSSSSSSSS 252


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 35.1 bits (77), Expect = 0.14
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 1   MEKSSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHS 60
           M+  + + NK   K  +NN Q+G K    K +  +                ++NL +  +
Sbjct: 571 MDNVNTSENKDKAKVDNNNQQSGDKPSKGKDKKESYSLKKSGDSSRKNGEIEKNLKEKKA 630

Query: 61  KTQELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHS-DS 119
           K QE     A + ++   ++    S    +  G    K    + +    +L K +    S
Sbjct: 631 KEQE---DKASKAAVKKQKAAESASIKHVEKQGLNSEKIVAKKKVESRESLDKKRSKVKS 687

Query: 120 CDSSRWPENSNSESTSKDV 138
             +S  P +S++ES   DV
Sbjct: 688 SKTSGKPVHSDTESEEVDV 706


>SB_25374| Best HMM Match : DUF1087 (HMM E-Value=3.2)
          Length = 144

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           +S + N +    +S+NL N  KLK   S   N                 + L   +S ++
Sbjct: 12  TSNSDNSNSDNLNSDNL-NSDKLKSDNSNSDNSNSDNS---------NSDKLKSDNSNSE 61

Query: 64  ELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSS 123
           +L+  ++D  +  +D S    S   + N+ +++ K  L+ +    +N  K+K  +S    
Sbjct: 62  KLNSNNSDSNNSNSDNSNSDNSN--SDNSNSDKLK--LVNSNPDNSNSDKLKLVNSNSDK 117

Query: 124 RWPENSNSESTSKDVSN 140
              +NSNS++++ D SN
Sbjct: 118 LNSDNSNSDNSNSDNSN 134


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 9/139 (6%)

Query: 2   EKSSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSK 61
           + S+  ++ S    S N+  +     +SK  +SN                 +N +  +S 
Sbjct: 216 DNSTSDNSTSDNSNSDNSYTDNSTSDNSKKDNSNPNNSNTDNSSSADNSNPDNSNSDNSN 275

Query: 62  TQELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCD 121
           T     +++D  S     S    + + T NN   E  +    +    +N     +S+S D
Sbjct: 276 TDN---SNSDNSSSDNSNSDNSNTDNSTSNNSNPENST----SDNSNSNNSNQDNSNSDD 328

Query: 122 SSRWPENSNSESTSKDVSN 140
           S   P+NSN+ +++ D SN
Sbjct: 329 SK--PDNSNTNNSNSDNSN 345



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 8   SNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQELSR 67
           SN +   + ++N  N     +S S +SN                D + S   +     S 
Sbjct: 148 SNTNNSNSDNSNTDNSNS-DNSTSDNSNPDNLTSDNSNTDNSGSDNSSSGNFNSDNSTSD 206

Query: 68  TS-ADEISIPTDRSGRQTSPHLTQNNG-AEEAKSFLIRALAPVTNLFKMKHSDSCDSSRW 125
            S +D  +     S   TS +   +N   + + S   +      N     +S S D+S  
Sbjct: 207 NSTSDNSNSDNSTSDNSTSDNSNSDNSYTDNSTSDNSKKDNSNPNNSNTDNSSSADNSN- 265

Query: 126 PENSNSESTSKDVSN 140
           P+NSNS++++ D SN
Sbjct: 266 PDNSNSDNSNTDNSN 280


>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 20/96 (20%), Positives = 36/96 (37%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           SS +SN S   +SS+N  +      S S  S+                  + S + S + 
Sbjct: 117 SSSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSN 176

Query: 64  ELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKS 99
             S +S++  S     S   +S + + N+    + S
Sbjct: 177 SNSSSSSNSSSNSNSSSNSSSSSNSSSNSSRSSSSS 212



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 19/96 (19%), Positives = 36/96 (37%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           SS +SN +   +SS++  +      S S +SN                  + S + S + 
Sbjct: 127 SSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSNSNSSSSSNSS 186

Query: 64  ELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKS 99
             S +S++  S     S    S   + N+ +  + S
Sbjct: 187 SNSNSSSNSSSSSNSSSNSSRSSSSSSNSNSNSSSS 222


>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 24/134 (17%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 8   SNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQELSR 67
           +N S  K S NN  +  K   +K+   N                D N +  ++ T + + 
Sbjct: 86  NNTSDNKNSDNNNTSDNKNSDNKNISDNNNTSDNNKTSDNNKTSDNNNTSDNNNTSDNNN 145

Query: 68  TSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSSRWPE 127
           TS +  +  +D +    + +   NN ++   +     ++   N     ++++ D++   +
Sbjct: 146 TSDNNNT--SDNNNTSDNNNSDNNNTSDNNNTSDNNNISDNNN--TSDNNNTSDNNNISD 201

Query: 128 NSNSESTSKDVSNL 141
           N+NS++ + D +N+
Sbjct: 202 NNNSDNNNSDNNNI 215


>SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)
          Length = 449

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 261 ANIPEGIERL-TPPRKSTSESDKNEKYNFFKVR-RIESGDQKDWWLTSNE 308
           A +  G+  L TPPR   + + K  K  F+K R   + GD +  W T NE
Sbjct: 29  APLDNGVHPLHTPPRNKVNSAIKATKVAFYKDRFSQQKGDLRSTWKTINE 78


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 239 PNQAFKKYKLADEEKPWWLDSNANIPEGIERLTPPRKSTSESDKNEKYNFFKV---RRIE 295
           P  +F +  L D++  W   S+ N     +  +  + S   SD ++KY+ FK    R++E
Sbjct: 578 PIPSFPEDALKDKDSGWSF-SDGNQQNAPKEPSQEQTSQLPSDPSDKYSVFKTAGDRQME 636

Query: 296 SGDQ-KDW 302
           S +  KDW
Sbjct: 637 SNENFKDW 644


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 7   ASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQELS 66
           A N  ++K    N     +    + R +N               +  +     S+T  LS
Sbjct: 382 AGNFRIEKEKGPNSSGAMRFLRREGRQANTTQSSKVNEAKEETADAGSTGSQPSQTH-LS 440

Query: 67  RTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSSRWP 126
               D  S  T RS R  SP    +   +EA   L  + +P  +L  +  +   DSS  P
Sbjct: 441 LKEKDRES--TSRS-RSPSPFRRLHRHTQEATERLTASCSPAISLSSLLAAAKDDSSTDP 497

Query: 127 ENSNSESTSKDVSNLITE 144
              N E   ++  + + E
Sbjct: 498 VKENVEVEEEEFQDALPE 515


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 7   ASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQELS 66
           A N  ++K    N     +    + R +N               +  +     S+T  LS
Sbjct: 256 AGNFRIEKEKGPNSSGAMRFLRREGRQANTTQSSKVNEAKEETADAGSTGSQPSQTH-LS 314

Query: 67  RTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSSRWP 126
               D  S  T RS R  SP    +   +EA   L  + +P  +L  +  +   DSS  P
Sbjct: 315 LKEKDRES--TSRS-RSPSPFRRLHRHTQEATERLTASCSPAISLSSLLAAAKDDSSTDP 371

Query: 127 ENSNSESTSKDVSNLITE 144
              N E   ++  + + E
Sbjct: 372 VKENVEVEEEEFQDALPE 389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,591
Number of Sequences: 59808
Number of extensions: 671423
Number of successful extensions: 1422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1402
Number of HSP's gapped (non-prelim): 26
length of query: 511
length of database: 16,821,457
effective HSP length: 85
effective length of query: 426
effective length of database: 11,737,777
effective search space: 5000293002
effective search space used: 5000293002
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 62 (29.1 bits)