GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000614-TA|BGIBMGA000614-PA|undefined
         (511 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29094-4|CAA82344.2|  507|Caenorhabditis elegans Hypothetical pr...    31   1.9  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    31   1.9  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    31   1.9  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    31   2.5  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    31   2.5  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    31   2.5  
Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical pr...    30   4.4  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    29   7.8  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    29   7.8  

>Z29094-4|CAA82344.2|  507|Caenorhabditis elegans Hypothetical
           protein C07A9.6 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 260 NANIPEGIERLTPPRKSTSESDKNEKYNFFKVRRIESGDQKDWWLTSNE 308
           N  +PEG+     P   T ++ K E    F+    ESGD  D W T  E
Sbjct: 62  NNKLPEGVSEYRIPIHFT-DTLKTEGLKVFQSMMFESGDAHDLWWTGQE 109


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 408 LETPRENENYRGRTSPYENNRQCRR-RSSANAFQKV--DRYISRYTDIDDILG 457
           ++  RE +N+RGRT  + N    +R R+S N+ ++    R    Y  ID ++G
Sbjct: 892 MQDARERQNFRGRTGSFYNTAAPQRDRTSYNSNRRPSHSRSQDEYVPIDSVIG 944


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 408 LETPRENENYRGRTSPYENNRQCRR-RSSANAFQKV--DRYISRYTDIDDILG 457
           ++  RE +N+RGRT  + N    +R R+S N+ ++    R    Y  ID ++G
Sbjct: 892 MQDARERQNFRGRTGSFYNTAAPQRDRTSYNSNRRPSHSRSQDEYVPIDSVIG 944


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 400 GDRRSPEGLETPRENENYRGRTSPYENNRQCRRRSSANAFQKVDRYISR 448
           G RRS       R +   RGR +        +RRS + + QKV R +SR
Sbjct: 153 GSRRSSRRRSRHRSSSKARGRRASTAKKTPAKRRSRSRSQQKVKRSMSR 201


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 400 GDRRSPEGLETPRENENYRGRTSPYENNRQCRRRSSANAFQKVDRYISR 448
           G RRS       R +   RGR +        +RRS + + QKV R +SR
Sbjct: 153 GSRRSSRRRSRRRSSSKARGRRASTAKKTPAKRRSRSRSQQKVKRSMSR 201


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 1/137 (0%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDE-NLSKTHSKT 62
           SS +S+   +    ++ ++  K  H K+  S+               EDE +  K H+  
Sbjct: 222 SSSSSSSESEDEKHHHKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAK 281

Query: 63  QELSRTSADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLFKMKHSDSCDS 122
           + +        S  +  S   +S   + ++ +E       + +    +  K  H  +  S
Sbjct: 282 KHVKHHKKAASSSSSSSSSSSSSSSSSSSSSSESEDEKKKKKVHHKKSHGKKHHKKAASS 341

Query: 123 SRWPENSNSESTSKDVS 139
           S    +S+S S+S   S
Sbjct: 342 SSSSSSSSSSSSSSSSS 358


>Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical
           protein F10B5.3 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 69  SADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIR-ALAPVTNLFKMKHSDSCDSSRWPE 127
           S  E SI TD   +    + T+NN +EE   F  R  L+  + LF+    D+  SS    
Sbjct: 9   SPSESSIKTDYDAKIRVLYSTKNNKSEEESVFAHRLVLSTFSPLFQQLLQDATSSS---- 64

Query: 128 NSNSESTSKD 137
            S + STS D
Sbjct: 65  TSTTSSTSSD 74


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 400 GDRRSPEGLETPRENENYRGRTSPYENNRQCRRRSSANAFQKVDRYISR 448
           G RRS       R +   RGR +        +RRS + + QKV R +SR
Sbjct: 147 GSRRSSRRRSRRRSSLKARGRRASTAKKTPAKRRSRSRSQQKVKRSMSR 195


>U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical
           protein ZC449.5 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 252 EKPWWLDSNANIPEGIERLTPPRKSTSESDKNEKYNFFKVRRIESGDQKDWWLTSNENSL 311
           E+P   +S     E  E+ T   K   + DK +K +  K ++ E  ++ D    S  +S 
Sbjct: 277 EEPQSSESTPTSEESTEQSTEKPKKEDKKDKKDKKD--KKQKKEDSEEDDDDKKSKSSSS 334

Query: 312 SGNKLESHSLSKSGS 326
           S +K +  S S+S S
Sbjct: 335 SDSKTDEKSTSESDS 349


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 256 WLDSNANIPEGIERLTPPRKSTSESDKNEKYNFFKVRRIE------SGDQKDWWLTSNEN 309
           W   + ++  G +    PR +  E       N   VRR        SGD++ +W  S +N
Sbjct: 6   WKKVDISVDYGSKGKGAPRGNGGEKGTRRSANDEAVRRRSGEEDSASGDEQQYWSRSKDN 65

Query: 310 SLSGNKLESHSLSKSGSD 327
               N++ S  +  SGS+
Sbjct: 66  KSPINEMSSDRVVDSGSN 83


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 256 WLDSNANIPEGIERLTPPRKSTSESDKNEKYNFFKVRRIE------SGDQKDWWLTSNEN 309
           W   + ++  G +    PR +  E       N   VRR        SGD++ +W  S +N
Sbjct: 203 WKKVDISVDYGSKGKGAPRGNGGEKGTRRSANDEAVRRRSGEEDSASGDEQQYWSRSKDN 262

Query: 310 SLSGNKLESHSLSKSGSD 327
               N++ S  +  SGS+
Sbjct: 263 KSPINEMSSDRVVDSGSN 280


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.309    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,614
Number of Sequences: 27539
Number of extensions: 500590
Number of successful extensions: 1180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 11
length of query: 511
length of database: 12,573,161
effective HSP length: 85
effective length of query: 426
effective length of database: 10,232,346
effective search space: 4358979396
effective search space used: 4358979396
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 62 (29.1 bits)