GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000614-TA|BGIBMGA000614-PA|undefined
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p...    30   4.2  
At5g63640.1 68418.m07990 VHS domain-containing protein / GAT dom...    29   5.5  
At2g05060.1 68415.m00528 protein kinase family protein contains ...    29   5.5  
At5g14760.1 68418.m01732 L-aspartate oxidase family protein simi...    29   7.3  
At2g21550.1 68415.m02565 bifunctional dihydrofolate reductase-th...    29   7.3  
At5g10500.1 68418.m01216 kinase interacting family protein simil...    29   9.7  
At5g04510.2 68418.m00450 3-phosphoinositide-dependent protein ki...    29   9.7  
At4g30200.3 68417.m04295 expressed protein contains weak similar...    29   9.7  
At4g30200.2 68417.m04294 expressed protein contains weak similar...    29   9.7  
At4g30200.1 68417.m04293 expressed protein contains weak similar...    29   9.7  
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi...    29   9.7  

>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
           subunit, putative contains 5 WD-40 repeats (PF00400);
           similar to katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 1180

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 69  SADEISIPTDRSGRQTSPHLTQNNGAEEAKSFLIRALAPVTNLF-----KMKHSDSCDSS 123
           + D   + + R  R ++ +LT +     +K     + APV  +      KMK  +   +S
Sbjct: 705 ATDTPPVTSTRPDRTSATNLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKSDEPSITS 764

Query: 124 RWPENSNSESTSKDVSNLIT 143
            WP+ +++   + DVS +I+
Sbjct: 765 TWPDRTSATDLTSDVSGVIS 784


>At5g63640.1 68418.m07990 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 447

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 269 RLTPPRKSTSESDKNEKYNFFKVRRIESGDQKDWWLTSNENSLSGNKL--ESHSLSKSGS 326
           R+T P +ST+ +  +   N   VR I +GDQK     SN N+ S + +   +H   +   
Sbjct: 268 RITVPSRSTTSNGYHS--NLEPVRPISNGDQKRELKASNANTESSSFISNRAHLKLEEED 325

Query: 327 DRSFPLRRIRHIESGE 342
           +   P +  R +  G+
Sbjct: 326 EEEEPEQLFRRLRKGK 341


>At2g05060.1 68415.m00528 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 315

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 297 GDQKDWWLTSNENSLSGNKLESHSLSKSGSDRSFPLRR----IRHIESGERPWWLSSDKN 352
           GD K WWL S+  + +   +   S+S   + R   L      +  + +G+RPWW   DKN
Sbjct: 171 GDSK-WWLPSHPFAGTPVYMSPESISNGETRRGLDLWSLGCVVLEMYTGKRPWW---DKN 226

Query: 353 IPEG 356
              G
Sbjct: 227 YDLG 230


>At5g14760.1 68418.m01732 L-aspartate oxidase family protein similar
           to L-aspartate oxidase, Escherichia coli [SP|P10902];
           contains Pfam profiles PF00890 FAD binding domain,
           PF02910 Fumarate reductase/succinate dehydrogenase
           flavoprotein C-terminal domain
          Length = 651

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 91  NNGAEEAKSFLIRALAPVTNLFKMKHSDSCDSSRW 125
           +N   EA  F  RA+ P T L K    D C S +W
Sbjct: 467 SNSLLEALVFARRAVQPSTELMKRTRLDVCASEKW 501


>At2g21550.1 68415.m02565 bifunctional dihydrofolate
           reductase-thymidylate synthase, putative / DHFR-TS,
           putative similar to THY-1 [SP| Q05762] and THY-2
           [SP|Q05763] from Arabidopsis thaliana; contains Pfam
           profiles PF00303 thymidylate synthase and PF00186
           dihydrofolate reductase
          Length = 492

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 274 RKSTSESDKNEKYNFFKVRRIESGDQKDWWLTSNENSLSGNKLESHSLSKSGSDRSFPLR 333
           +KS +ESD  E Y+F      E  ++  +         SG+  ++ +LSK G    F LR
Sbjct: 211 KKSVAESDLKE-YSFLPKMVFERHEEFGYLNLVQNIISSGDMNDNSTLSKFGCQMRFNLR 269

Query: 334 RIRHIESGERPWWL 347
           +   + + ++ +WL
Sbjct: 270 KTFPLLTTKKIFWL 283


>At5g10500.1 68418.m01216 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 848

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 181 ESDSDKKFSPRNNHQSSSDKNIPKM 205
           + D D   SPR++   +S+KN+PK+
Sbjct: 113 DDDDDAPVSPRHHKNKTSNKNVPKV 137


>At5g04510.2 68418.m00450 3-phosphoinositide-dependent protein
           kinase, putative similar to 3-phosphoinositide-dependent
           protein kinase-1 [Oryza sativa] gi|5001830|gb|AAD37166
          Length = 408

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 302 WWLTSNENSLSGNKLESHSLSKSGSDRSFPLRRIRHIESGERPWW 346
           W LT   +SL+    E HS   + S+ S  + R+  I+S +  WW
Sbjct: 348 WNLTHIGDSLATQN-EGHSAPPTSSESSGSITRLASIDSFDSRWW 391


>At4g30200.3 68417.m04295 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 702

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/81 (20%), Positives = 33/81 (40%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           S+++SN S  +  SNN    PK   SK+ D+N                D ++ +     +
Sbjct: 470 STLSSNPSSVEAESNNDYIVPKKPSSKNEDNNSPSVDESAAKRMKRTTDSDIVQIEKDVE 529

Query: 64  ELSRTSADEISIPTDRSGRQT 84
           ++     +E     D++  +T
Sbjct: 530 QIVLLDDEEQEAVLDKTESET 550


>At4g30200.2 68417.m04294 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 714

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/81 (20%), Positives = 33/81 (40%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           S+++SN S  +  SNN    PK   SK+ D+N                D ++ +     +
Sbjct: 482 STLSSNPSSVEAESNNDYIVPKKPSSKNEDNNSPSVDESAAKRMKRTTDSDIVQIEKDVE 541

Query: 64  ELSRTSADEISIPTDRSGRQT 84
           ++     +E     D++  +T
Sbjct: 542 QIVLLDDEEQEAVLDKTESET 562


>At4g30200.1 68417.m04293 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 685

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/81 (20%), Positives = 33/81 (40%)

Query: 4   SSIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQ 63
           S+++SN S  +  SNN    PK   SK+ D+N                D ++ +     +
Sbjct: 453 STLSSNPSSVEAESNNDYIVPKKPSSKNEDNNSPSVDESAAKRMKRTTDSDIVQIEKDVE 512

Query: 64  ELSRTSADEISIPTDRSGRQT 84
           ++     +E     D++  +T
Sbjct: 513 QIVLLDDEEQEAVLDKTESET 533


>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 721

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 5   SIASNKSLQKTSSNNLQNGPKLKHSKSRDSNXXXXXXXXXXXXXXXEDENLSKTHSKTQE 64
           S+    S  K+ S+NL +  K   SKS  +                +    S+  +KT  
Sbjct: 84  SVQPVPSASKSKSSNLSSAAK--SSKSSTTPSSAAQFGGSYSPARAQSRASSQVGAKTGN 141

Query: 65  LSRTSADEISIPTDRSGRQTS 85
           + R S++  S+ T  SG ++S
Sbjct: 142 IIRPSSNSASVTTKPSGNKSS 162


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,466,436
Number of Sequences: 28952
Number of extensions: 474961
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 11
length of query: 511
length of database: 12,070,560
effective HSP length: 84
effective length of query: 427
effective length of database: 9,638,592
effective search space: 4115678784
effective search space used: 4115678784
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 61 (28.7 bits)