GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000613-TA|BGIBMGA000613-PA|IPR002928|Myosin tail,
IPR009053|Prefoldin
         (664 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.49 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.49 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   2.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   6.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 383 YGVAQRRIQSLTGEVEEIRGNYEQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKI 442
           YG  Q+ +Q L  E  +   + E A+   RS+  +++       E+T   +      A I
Sbjct: 893 YGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKEGDAGI 952

Query: 443 --EQELAIVAADYDEITKELRIADERYQRVQTE 473
             +QE       Y  +  EL+ A     RV  E
Sbjct: 953 WQQQEFTGPPLPYAALIDELKPATRYTIRVIAE 985


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 383 YGVAQRRIQSLTGEVEEIRGNYEQALRVKRSVEQQYEESQTRVNELTVINVNLSSSKAKI 442
           YG  Q+ +Q L  E  +   + E A+   RS+  +++       E+T   +      A I
Sbjct: 889 YGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKEGDAGI 948

Query: 443 --EQELAIVAADYDEITKELRIADERYQRVQTE 473
             +QE       Y  +  EL+ A     RV  E
Sbjct: 949 WQQQEFTGPPLPYAALIDELKPATRYTIRVIAE 981


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 421 SQTRVNELTVINVN-LSSSKAKIEQELAIVAADYDEITKELRIADE 465
           S+T +N   +++ N LSSS+ K++Q++  +  D    +  +  ++E
Sbjct: 338 SKTAMNSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSSEE 383


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/53 (18%), Positives = 27/53 (50%)

Query: 453 YDEITKELRIADERYQRVQTELKHTVEHLHEEQERIVKIEAVKKSLEIEVKNI 505
           +D+ T  ++     Y  +Q +LKH  +++ ++ E  + +     S+E ++  +
Sbjct: 154 FDQQTCFMKFGSWTYDGIQIDLKHINQNMGDKVEIGIDLREYYPSVEWDILGV 206


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.331 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,658
Number of Sequences: 429
Number of extensions: 7011
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 5
length of query: 664
length of database: 140,377
effective HSP length: 62
effective length of query: 602
effective length of database: 113,779
effective search space: 68494958
effective search space used: 68494958
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)