Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000611-TA|BGIBMGA000611-PA|undefined
         (62 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    23   4.8  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    23   6.3  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    22   8.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    22   8.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    22   8.3  

>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
          exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 6  NTFGTADTSRHVRLALQRSLYDWQMAMTIPLSAVASL 42
          N+F      RH R  L  S YD  MA  + L  V  +
Sbjct: 16 NSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNVVGM 52


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 141

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 24 SLYDWQMAMTIPLSAVASLRVACAQPRRCAKIIHID 59
          SL+D      IP +++  L  AC Q    A+I  I+
Sbjct: 13 SLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIE 48


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 29  QMAMTIPLSAVASLRVACAQPRRCA 53
           Q  +   L  + + ++AC QPRR A
Sbjct: 110 QFVLYDELPHLTNTQIACTQPRRVA 134


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 9    GTADTSRHVRLALQRSLYDWQMAMTIPLSAVASLRVACAQP 49
            GT +T    ++ +Q   + +Q+  +IPLS  + +R+   +P
Sbjct: 3334 GTFNTVLRSKIEIQNRNFSFQIPSSIPLS--SHMRIIADKP 3372


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 30  MAMTIPLSAVASLRVACAQPRRCAKIIHIDV 60
           MA+   L A++   + C +P R     H+D+
Sbjct: 451 MAVNASLGALSKYYIYCTEPFRIPLSGHLDI 481


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.133    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,881
Number of Sequences: 5004
Number of extensions: 6303
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 62
length of database: 2,362,478
effective HSP length: 43
effective length of query: 19
effective length of database: 2,147,306
effective search space: 40798814
effective search space used: 40798814
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)