GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000611-TA|BGIBMGA000611-PA|undefined
         (62 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  

>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 7/25 (28%), Positives = 18/25 (72%)

Query: 19 LALQRSLYDWQMAMTIPLSAVASLR 43
          + ++  LY+W++++ +P+S +  LR
Sbjct: 16 IGIESGLYEWEVSVDVPISRMWCLR 40



 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/39 (20%), Positives = 22/39 (56%)

Query: 19  LALQRSLYDWQMAMTIPLSAVASLRVACAQPRRCAKIIH 57
           + ++  LY+W++++  P+S V  L+   +  +    ++H
Sbjct: 102 IGIKSGLYEWKVSVDAPISRVWCLKGDASTQQLTGMLVH 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.133    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,094
Number of Sequences: 59808
Number of extensions: 52708
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 6
length of query: 62
length of database: 16,821,457
effective HSP length: 41
effective length of query: 21
effective length of database: 14,369,329
effective search space: 301755909
effective search space used: 301755909
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)