GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000611-TA|BGIBMGA000611-PA|undefined
         (62 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1948|AAF58211.2|  668|Drosophila melanogaster CG10151-P...    25   9.4  
AE013599-1947|AAM68550.1|  668|Drosophila melanogaster CG10151-P...    25   9.4  
AE013599-1946|AAM68549.1|  668|Drosophila melanogaster CG10151-P...    25   9.4  

>AE013599-1948|AAF58211.2|  668|Drosophila melanogaster CG10151-PC,
           isoform C protein.
          Length = 668

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 6   NTFGTADTSRHVRLALQRSLYDWQMAM 32
           N+   A+  +H RL+L+R   DW+ +M
Sbjct: 540 NSQNEANEIQHNRLSLERERLDWEKSM 566


>AE013599-1947|AAM68550.1|  668|Drosophila melanogaster CG10151-PB,
           isoform B protein.
          Length = 668

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 6   NTFGTADTSRHVRLALQRSLYDWQMAM 32
           N+   A+  +H RL+L+R   DW+ +M
Sbjct: 540 NSQNEANEIQHNRLSLERERLDWEKSM 566


>AE013599-1946|AAM68549.1|  668|Drosophila melanogaster CG10151-PA,
           isoform A protein.
          Length = 668

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 6   NTFGTADTSRHVRLALQRSLYDWQMAM 32
           N+   A+  +H RL+L+R   DW+ +M
Sbjct: 540 NSQNEANEIQHNRLSLERERLDWEKSM 566


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.327    0.133    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,723
Number of Sequences: 52641
Number of extensions: 69827
Number of successful extensions: 236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 3
length of query: 62
length of database: 24,830,863
effective HSP length: 43
effective length of query: 19
effective length of database: 22,567,300
effective search space: 428778700
effective search space used: 428778700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)