GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000611-TA|BGIBMGA000611-PA|undefined
         (62 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa...    27   2.2  
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as...    27   2.2  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    25   8.8  

>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
            protein kinase protein.
          Length = 1425

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 1    MLADPNTFGTADTSRHVRLALQRSLYDWQMAMTIPLSAV 39
            +  D   FG+ D +RH+ L +   + D QMA    L+ +
Sbjct: 1274 LFTDVVCFGSRDVARHLTLGIDVGVADLQMASRCELACL 1312


>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
            (death-associated protein)kinase homolog protein 1
            protein.
          Length = 1425

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 1    MLADPNTFGTADTSRHVRLALQRSLYDWQMAMTIPLSAV 39
            +  D   FG+ D +RH+ L +   + D QMA    L+ +
Sbjct: 1274 LFTDVVCFGSRDVARHLTLGIDVGVADLQMASRCELACL 1312


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 4   DPNTFGTADTSRHVRLALQRSLYDWQMAMTIPLSAVASLRVACA 47
           +P  F    T R V +A+  +++  Q  MT+P S+++    ACA
Sbjct: 156 NPIAFNQHLTLRIVYIAIPLAIF--QALMTVPTSSMSCTDTACA 197


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.133    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,140
Number of Sequences: 27539
Number of extensions: 34685
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 3
length of query: 62
length of database: 12,573,161
effective HSP length: 42
effective length of query: 20
effective length of database: 11,416,523
effective search space: 228330460
effective search space used: 228330460
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)