GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000611-TA|BGIBMGA000611-PA|undefined
         (62 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   4.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    18   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 3   ADPNTFGTADTSRHVRL 19
           A+P + GT  TS   RL
Sbjct: 174 AEPGSTGTTTTSTGTRL 190


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 23  RSLYDWQMAMTIPLSAVASLRV 44
           +SL DW+  M I       +RV
Sbjct: 379 KSLEDWENEMNIITKGKPLIRV 400


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.133    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487
Number of Sequences: 429
Number of extensions: 373
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 62
length of database: 140,377
effective HSP length: 42
effective length of query: 20
effective length of database: 122,359
effective search space:  2447180
effective search space used:  2447180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)