GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000611-TA|BGIBMGA000611-PA|undefined
         (62 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47750.1 68416.m05202 ABC transporter family protein probable...    25   4.8  
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    25   4.8  

>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 4   DPNTFGTADTSRHVRLALQRSLYDWQMAM 32
           DPN+F   DT+ H+ LAL R+L     A+
Sbjct: 132 DPNSF---DTNLHIFLALSRNLLSTSFAV 157


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity
          to L-fucose kinase [Homo sapiens]
          gi|21212956|emb|CAD29647
          Length = 1055

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 22 QRSLYDWQMAMTIPLSAVASLRVACAQP 49
          Q  LYDWQ+     +  +AS  V  A P
Sbjct: 46 QAELYDWQLRRAKRMGRIASSTVTLAVP 73


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.133    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,517
Number of Sequences: 28952
Number of extensions: 31641
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 2
length of query: 62
length of database: 12,070,560
effective HSP length: 42
effective length of query: 20
effective length of database: 10,854,576
effective search space: 217091520
effective search space used: 217091520
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)