GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000610-TA|BGIBMGA000610-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    29   1.2  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   4.8  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   8.4  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   8.4  

>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 100 LVDLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 147
           + D++Q +   S C  ++V   YGC++DG   +I++E +       L K
Sbjct: 49  ITDIEQEVFMLSNCNSSNVIQYYGCFVDGYTLWILMEHMDGGSVSGLLK 97


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 345 FGFLTCLTSIPLLANEGTSALQLTEDFPEHSRIPLEKLWDISPIKNEQYQMRFV 398
           +   T L +I L+ N  T  +   E+FP  + +P+    ++S ++   Y +R +
Sbjct: 148 YSCFTKLPAISLVYNPKTPLISQYEEFPLDTAVPITVFKNLSSLEIRGYDIRSI 201


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 11/57 (19%)

Query: 124 YLDG--VNDYIVLE-DLGESRCKSLTKHPTKCERDSVLETLAHLHAVSMTLRIKKPD 177
           Y++G  + D+++    + E  CK L K         +LETL HLH   +T R  KP+
Sbjct: 250 YVEGGDLMDFLIANGSIDEQDCKPLLKQ--------LLETLLHLHKQGVTHRDIKPE 298


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 295 TNVCSNVEQFEEALDHYYNFLDYFLKDMGMDVAIVFPRDAFENELKIYG 343
           +N+  +  +  + LD +   +  +L++ GMD+      D   N ++ YG
Sbjct: 5   SNISISAVKLPQDLDDFKMLVQEYLQEFGMDLTFQNVDDELANPMRKYG 53


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,695
Number of Sequences: 5004
Number of extensions: 86304
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 4
length of query: 410
length of database: 2,362,478
effective HSP length: 74
effective length of query: 336
effective length of database: 1,992,182
effective search space: 669373152
effective search space used: 669373152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)