GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000610-TA|BGIBMGA000610-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0099 + 20070925-20073867                                         32   0.96 
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    30   3.9  
02_03_0144 + 15694766-15694883,15694980-15697612                       29   5.1  

>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query: 158 LETLAHLHAVSMTLRIKKPDEFKRIADLIPEAYYTEKNRDWYSKFQHKAVMIDQAILIEH 217
           L  L+HL   S ++    P     +  ++P+ YYT ++ +  S   +K+++  + + +E+
Sbjct: 697 LGNLSHLDLASNSISGPLPQYLANLTGMVPKQYYTNEHEERLSGCDYKSLVTMKGLELEY 756

Query: 218 ED 219
           ++
Sbjct: 757 DE 758


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 103 LQQSLGASECIQN--SVPICYGCYLDGVNDYIVLEDLGESRCKSL 145
           + Q  G S+C+ +  S+  C    LDG +  I+L+DL E+ C  L
Sbjct: 281 ISQIKGQSDCLDDLQSISNCLEEILDGKSCLIILDDLWENSCFQL 325


>02_03_0144 + 15694766-15694883,15694980-15697612
          Length = 916

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 94  SDVLPILVDLQQSLGASECIQNSVPICYGCYLDG--VNDYIVLEDLGESRCKSLTKHPTK 151
           +D  P+L+D  +++G SE         Y C  DG   +D   +   GE    +++ H  K
Sbjct: 157 ADSSPMLIDKVENIGTSENTDLGKGYSYDCVSDGNAGSDVAAVHIAGEEP-GAISNHSMK 215

Query: 152 CERDSVLETL 161
            E DSV + +
Sbjct: 216 GEVDSVTDQI 225


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,536,622
Number of Sequences: 37544
Number of extensions: 483839
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 3
length of query: 410
length of database: 14,793,348
effective HSP length: 84
effective length of query: 326
effective length of database: 11,639,652
effective search space: 3794526552
effective search space used: 3794526552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)