GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000610-TA|BGIBMGA000610-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.18 
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         30   3.9  
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_34618| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.1  

>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 5   SLDVISRYLTKNVIAEVFKLKTDSDEDIENIELTKAAPNG----EGLLSAVYRI-KVTGK 59
           + D ++  L K  ++E+F+ +T  + D++ + L     NG     G +S++ +I K TG 
Sbjct: 644 NFDNVADLLRKINVSEIFQEETAPERDMDVMALDSGGKNGTQLENGNVSSIGKIGKPTGS 703

Query: 60  RYSTSFIGKGFVDNERIKNSLNCAELFRREALFYSDVLPILVDLQQSLGAS-ECIQNSVP 118
               +    G +D+  +K   N  +L        S+ +P+  +  ++ G + +   N++P
Sbjct: 704 EAMKTKSNAGPLDSNAMKTESNTGQLDSNAMKTESNTVPLGSNAMKTKGNTIQVANNTIP 763

Query: 119 ICYGCYLDGVNDYIVLEDLGESR 141
                  +      + EDL + R
Sbjct: 764 TASDAANEKAKAAKLAEDLEKER 786


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 72  DNERIKNSLNCAELFRREALFYSDVLPILVDLQQSLGASECIQNSVPICYGCYLDGVND 130
           DN  + N +   E  +    +Y +++ ++ + + +L +     NS P+ +   LDGVND
Sbjct: 664 DNLYVDNIITGCETHQEALSYYDELISVMTEAKFNLRS--WASNSQPLLHHAALDGVND 720


>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 225 YKKYNELLGQDVYGCLIEMTTTRGDFTVINHGDSWTPNFLRSKG--RTVAIDFQMIRCAS 282
           Y  Y   + +D+ G   EM +  G F+V +  + +     RS G  R  A     + C S
Sbjct: 293 YAAYGMQIYKDLKG---EMHSNLGRFSVASDREEYKIGSGRSVGFHRLSASYIPYLCCFS 349

Query: 283 PVTDLMLFLFMCTNVCSNVEQFEEALDH 310
           P TDL+  +   T    NV    E + H
Sbjct: 350 PATDLICRVIFTTESYCNVVMNAEGVSH 377


>SB_34618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 5   SLDVISRYLTKNVIAEVFKLKTDSDEDIENIELTKAAPNGEGLLSAVYRIKVTGKRYSTS 64
           SLD++  Y  ++V A +        +  EN E + A     G   +  R+ V GK Y + 
Sbjct: 172 SLDLLPHYCFRSVFAWIQWFTLTQIQTFENAESSTAFSKVSGFTGSSMRVSVDGKVYGSQ 231

Query: 65  FI 66
            I
Sbjct: 232 RI 233


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 60  RYSTSFIGKGFVDNERIKNSLNCAELFRREALFYSDVLPILVDLQQSLGASECIQNSVPI 119
           R+ ++ + +   DN  + N +   E  +    +Y +   ++ + + +L +     NS P+
Sbjct: 553 RFKSTPVTQDMRDNLYVDNIITGCETHQEALSYYDESRSVMTEAKFNLRS--WASNSQPL 610

Query: 120 CYGCYLDGVND 130
            +   LDGVND
Sbjct: 611 LHRAALDGVND 621


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,660,799
Number of Sequences: 59808
Number of extensions: 571416
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 8
length of query: 410
length of database: 16,821,457
effective HSP length: 84
effective length of query: 326
effective length of database: 11,797,585
effective search space: 3846012710
effective search space used: 3846012710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)