GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000610-TA|BGIBMGA000610-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (410 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   1.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   6.3  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 289 LFLFMCTNVCSN 300
           LFLF CTN C N
Sbjct: 301 LFLFACTNSCMN 312


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 5   SLDVISRYLTKNVIAEVFKLKTDSDEDIENIELT-----KAAPNGEGLLSAVYRIKVTGK 59
           S  +  R   KNV+ ++ K+K      + NIE +     K A +   L +  +  + T  
Sbjct: 159 SKPIFEREEIKNVLTKINKIKEHDTVLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSS 218

Query: 60  RYS 62
           RYS
Sbjct: 219 RYS 221


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 140 SRCKSLTKHPTKCERDSVLETLAHLHA 166
           ++C +L + P+KC + SV  +    H+
Sbjct: 353 TKCNTLERTPSKCSQTSVHYSNGQTHS 379


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 302 EQFEEALDHYYNFLDYFLKDMGMDVAIVFPRDAFEN 337
           EQ       Y N++D   KDM ++++     +  EN
Sbjct: 448 EQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVEN 483


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,693
Number of Sequences: 429
Number of extensions: 5395
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 410
length of database: 140,377
effective HSP length: 59
effective length of query: 351
effective length of database: 115,066
effective search space: 40388166
effective search space used: 40388166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)