GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000610-TA|BGIBMGA000610-PA|IPR011009|Protein
kinase-like, IPR004119|Protein of unknown function DUF227
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21720.1 68415.m02584 hypothetical protein contains Pfam prof...    29   4.3  
At1g14210.1 68414.m01682 ribonuclease T2 family protein contains...    29   5.6  
At2g28140.1 68415.m03418 expressed protein                             29   7.4  

>At2g21720.1 68415.m02584 hypothetical protein contains Pfam
           profile: PF04842 plant protein of unknown function
           (DUF639)
          Length = 703

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 11/19 (57%), Positives = 17/19 (89%)

Query: 90  ALFYSDVLPILVDLQQSLG 108
           +LFYSD++P+LVD + S+G
Sbjct: 182 SLFYSDMMPLLVDHEPSVG 200


>At1g14210.1 68414.m01682 ribonuclease T2 family protein contains
           similarity to RNase GI:7768564 from [Nicotiana tabacum];
           contains Pfam profile PF00445: Ribonuclease T2 family
          Length = 247

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 121 YGCYLDGVNDYIVLEDLGESRCKSLTKHPTKCERDSVLETLAHLHAVSMT 170
           Y C  +   +++    + +  C S  K P+  ERDS+ E+L+ + +VS T
Sbjct: 198 YICLDNYAKEFVECPYVPDKSCASKIKFPSLPERDSLNESLSVMSSVSTT 247


>At2g28140.1 68415.m03418 expressed protein
          Length = 211

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 154 RDSVLETLAHLHAVSMTLR---IKKPDEFKRIADLIPEAYYTEKNRDWYSKFQHKAVMID 210
           R S+L T   L    M      I K D+  ++ DL+ +A    K +D  ++ ++K +++D
Sbjct: 27  RHSLLHTTMELEQTRMVASEELIAKDDQIMQLKDLLNKAI---KEKD-EAQERYKRILLD 82

Query: 211 QAILIEHE 218
           Q  L++H+
Sbjct: 83  QNFLLQHQ 90


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,786,389
Number of Sequences: 28952
Number of extensions: 424520
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 5
length of query: 410
length of database: 12,070,560
effective HSP length: 83
effective length of query: 327
effective length of database: 9,667,544
effective search space: 3161286888
effective search space used: 3161286888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)