GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000609-TA|BGIBMGA000609-PA|undefined
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   0.90 
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   4.8  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    23   6.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    23   8.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    23   8.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    23   8.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    23   8.4  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 4   AVFGGVHRPESGKAQAPQQGTSSDHAATSLAKLPQTRAPGTNFH 47
           + F     P      +P  G  +D A+ + +KLP +  P T F+
Sbjct: 283 STFSASSPPSGSMLASPYNGYQNDAASFAHSKLPSSANPNTPFN 326


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 21  QQGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGGL 58
           Q   S+ + A+S+ ++P+  +  TN+  V A    G L
Sbjct: 572 QLAESAQYPASSIIRIPEEDSNKTNYQLVAALTAFGAL 609


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 16  KAQAPQQGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGGLR 59
           ++   Q+G  +    T    LP    P   ++R +++ +S  LR
Sbjct: 66  RSSLDQRGKRASSIGTGFEALPHADVPSHEYYRHISKDLSEPLR 109


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 57  GLRCAGAPTDLTLFRLVTAMIDTLGGKFGFLVHILEWISLT 97
           GL  +G+  D T+  LV    D +  + GF +  + W S+T
Sbjct: 253 GLFSSGSNIDSTIATLVLEPRDLIVYRKGFALLQIPWTSVT 293


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 20  PQQGTSSDHAATSLAKLPQTRAPG-TNFHR----VLARPVSGGLRCAGAPTDL 67
           P++G+SS +  + L  LP  R  G    HR    +   P+S  +      T+L
Sbjct: 212 PEEGSSSQNGLSPLVVLPAKRGRGRPPLHRSEQKIANTPISNNVTVESTGTNL 264


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 3   VAVFGGVHRPESGKAQAPQQGTSSDHAATSLAKLPQT 39
           V++ G  +   SG +  PQ    S  A  +++KLP +
Sbjct: 228 VSLMGKANSNRSGHSHQPQSTQFSPPANDNISKLPSS 264


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 47  HRVLARPVSGGLRCAGAPTDLTLFRLVTAMIDTLGGKFGFL 87
           H ++     GG  C G  T  T+     AM  TL G   +L
Sbjct: 219 HDIIRHACPGGGACGGMYTANTMASCAEAMGMTLPGSSSYL 259


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,224
Number of Sequences: 5004
Number of extensions: 13162
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)