Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000609-TA|BGIBMGA000609-PA|undefined
(97 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 31 0.19
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 29 0.77
08_01_1059 - 10775143-10776063 28 1.4
12_01_0473 + 3708770-3710026 27 2.4
02_02_0084 + 6637145-6638677 27 3.1
02_02_0083 + 6628116-6628310,6628383-6629057 26 4.1
10_06_0037 + 9932967-9933112,9934815-9934822,9935213-9935349,993... 26 5.5
12_02_0448 - 19163172-19163258,19163701-19163919 25 7.2
05_04_0234 + 19282196-19282818,19282948-19283347 25 7.2
03_02_0987 - 12995754-12996347,12996440-12997684,12997772-129978... 25 7.2
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 25 9.5
02_05_0325 - 27951570-27952808 25 9.5
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 2 VVAVFGGVHRPESGKA-QAPQQGTSSDHAATSLAKLPQTRAPGTNFHRVLARPV 54
V A+ GG+H+ KA Q Q G+S T L + RAP F+ + +PV
Sbjct: 925 VSAIHGGIHQRARDKAVQEFQSGSSRILITTDLRGIDVLRAPAAIFYDLPTQPV 978
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 22 QGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGGLRCAGAPTDLTLFRL 72
+G +D S A P R P R + P G R + APT T FRL
Sbjct: 58 RGFQADGGEVSPANPPWQRCPPPPRRRFRSPPARDGRRSSRAPTYSTRFRL 108
>08_01_1059 - 10775143-10776063
Length = 306
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 6 FGGVHRPESGKAQAPQQGTSSDHAATSLAKLPQTR---APGTNFHRVLARPVSGGLRCA 61
+G VH S + + QG ++ HAA P G++ R P S GLR A
Sbjct: 205 YGAVHHGWSTQPPSSLQGIAARHAAAERPVYPADAFGYGAGSSSSRATGAPASAGLRWA 263
>12_01_0473 + 3708770-3710026
Length = 418
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 20 PQQGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGGLRCAGAPTD 66
PQ ++ AA A P T APG F + PVS A PT+
Sbjct: 275 PQAAAAAAAAAAMWAVAPNTAAPGGAFWML---PVSASSAAAARPTE 318
>02_02_0084 + 6637145-6638677
Length = 510
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 62 GAPTDLTLFRLV-TAMIDTLGGKFGFLVHILEWIS 95
G P D L LV A+ + GG FL HI++W++
Sbjct: 283 GIPRDELLHNLVFVAVFNAYGGFKIFLPHIVKWLA 317
>02_02_0083 + 6628116-6628310,6628383-6629057
Length = 289
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 62 GAPTDLTLFRLV-TAMIDTLGGKFGFLVHILEWIS 95
G P D L LV A+ + GG FL HI++W++
Sbjct: 70 GIPRDELLDNLVFVAIFNAFGGFKIFLPHIVKWLA 104
>10_06_0037 +
9932967-9933112,9934815-9934822,9935213-9935349,
9935761-9936438
Length = 322
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 12 PESGKAQAP--QQGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGGLRCAG 62
P + + + P QG SS A L + Q + N H + P + +RC G
Sbjct: 266 PRAPRVRQPTFDQGASSSAAPLLLMGMIQVPSSIHNMHTLECNPTNTSIRCLG 318
>12_02_0448 - 19163172-19163258,19163701-19163919
Length = 101
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 5 VFGGVHRPESGKAQAPQQGTSSDHAATSLAKLP 37
+FGG P+S + AP Q + +A L ++P
Sbjct: 17 LFGGGEAPKSAEKPAPVQKPAPSSSAEKLKEIP 49
>05_04_0234 + 19282196-19282818,19282948-19283347
Length = 340
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 30 ATSLAKLPQTRAPGTNFHRVLARPVSGGLRCAGAPTDLTLFRL 72
A S A RAPG + V+ V+GGL C P D R+
Sbjct: 264 APSPADAAAGRAPG---YGVITNIVNGGLECGHGPDDRVANRI 303
>03_02_0987 -
12995754-12996347,12996440-12997684,12997772-12997838,
12997982-12998073
Length = 665
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 45 NFHRVLARPVSGGLRCAGAPTDLTLFRLVTAMIDTLGG 82
+ H ++AR ++ +C G D + A+++T+ G
Sbjct: 265 SLHGLMARDIAAAAKCGGGGGDTDAVKKQRAVVETIVG 302
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 7 GGVHRPESGKAQAPQQGTSSDHAATSL----AKLPQTRAPGTNFHRVLAR 52
GG HRP + P G S H A+++ +++ + +N R+L +
Sbjct: 229 GGQHRPANEANPRPSDGPSHRHGASAVEYAGSRMDGSSQQNSNSSRILCK 278
>02_05_0325 - 27951570-27952808
Length = 412
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 40 RAPGTNFHRVLARPVSGGLRCAGAPTDL 67
RAP H +P G+R AG+P L
Sbjct: 286 RAPSPLHHHYTLQPSGDGVRAAGSPVVL 313
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,831
Number of Sequences: 37544
Number of extensions: 119265
Number of successful extensions: 267
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 12
length of query: 97
length of database: 14,793,348
effective HSP length: 70
effective length of query: 27
effective length of database: 12,165,268
effective search space: 328462236
effective search space used: 328462236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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