GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000609-TA|BGIBMGA000609-PA|undefined
         (97 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-22|CAB54414.2|  305|Caenorhabditis elegans Hypothetical...    27   2.1  
AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical ...    26   4.8  
AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical ...    26   4.8  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    25   6.3  
AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    25   6.3  
Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical pr...    25   8.3  

>AL110484-22|CAB54414.2|  305|Caenorhabditis elegans Hypothetical
           protein Y38E10A.22 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 12  PESGKAQAPQQGTSSDHAATSLAKLPQTRAPGT-NFHRVLAR 52
           PE  K  AP+Q T  D  A  LA+  Q     T   H ++AR
Sbjct: 229 PEPAKKVAPKQETKVDQEAAELARKIQIEEDKTRKRHEIVAR 270


>AF024502-4|AAB70374.1|  675|Caenorhabditis elegans Hypothetical
           protein M151.2 protein.
          Length = 675

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 10  HRPESGKAQAPQQGTSSDHAATSLAKLPQTRAP 42
           ++P     +  QQG+ SD  +  L + PQ  AP
Sbjct: 460 YQPPQTSVEPEQQGSPSDSDSKKLPESPQNSAP 492


>AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical
           protein M151.7 protein.
          Length = 416

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 10  HRPESGKAQAPQQGTSSDHAATSLAKLPQTRAP 42
           ++P     +  QQG+ SD  +  L + PQ  AP
Sbjct: 145 YQPPQTSVEPEQQGSPSDSDSKKLPESPQNSAP 177


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 19  APQQGTSSDHAATSLAKLPQTRAPGTNFHR 48
           A  + TSSD A T+ A + QT A   NF R
Sbjct: 77  ARYEWTSSDEARTNCAAISQTPASCENFIR 106


>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 10  HRPESGKAQAPQQGTSSDHAATSLAKLPQTRAP 42
           ++P     +  QQG+ SD  +  L + PQ  AP
Sbjct: 604 YQPPQTSVEPEQQGSLSDSNSKKLPESPQNSAP 636


>Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical
           protein H08M01.1 protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 3   VAVFGGVHRPESGKAQAPQQGTSSDHAATSLAKLPQTRAPGTN 45
           VA   G +  +SG    P      +H+ATS    P + A  TN
Sbjct: 133 VATQQGPNAEQSGILVPPASRQQPEHSATSTISAPLSPASSTN 175


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,009
Number of Sequences: 27539
Number of extensions: 81541
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 6
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)