GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000609-TA|BGIBMGA000609-PA|undefined
         (97 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   4.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   8.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 64  PTDLTLFRLVTAMIDTLGGKFGFLVHI 90
           PTD   +    AM D++GGK   L  I
Sbjct: 158 PTDDEPYASFKAMEDSVGGKCEVLYDI 184


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.8 bits (39), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 11  RPESGKAQAPQQGTSSD 27
           R  S   Q PQQG S D
Sbjct: 104 RSPSYSMQVPQQGASID 120


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 6.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 11  RPESGKAQAPQQGTSSD 27
           R  S   Q PQQG S D
Sbjct: 552 RSPSYSMQVPQQGASID 568


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 6.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 23   GTSSDHAATSLAKLPQTRAPG 43
            GTS+   A  ++K+P+  + G
Sbjct: 1252 GTSNSRGAAQMSKVPRDVSEG 1272


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.4 bits (38), Expect = 8.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 25  SSDHAATSLAKLPQTRAPGTNFHRVLA 51
           S D+ +    K   +R PG NF+ + A
Sbjct: 97  SRDYFSRPFEKRLHSRLPGRNFNLLRA 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,897
Number of Sequences: 429
Number of extensions: 791
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 97
length of database: 140,377
effective HSP length: 49
effective length of query: 48
effective length of database: 119,356
effective search space:  5729088
effective search space used:  5729088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)