GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000609-TA|BGIBMGA000609-PA|undefined
         (97 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g33715.1 68418.m04018 hypothetical protein                          29   0.64 
At3g17130.1 68416.m02186 invertase/pectin methylesterase inhibit...    27   2.0  
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ...    27   2.6  
At4g02600.1 68417.m00354 seven transmembrane MLO family protein ...    26   3.4  
At4g15510.2 68417.m02369 photosystem II reaction center PsbP fam...    25   7.9  
At4g15510.1 68417.m02370 photosystem II reaction center PsbP fam...    25   7.9  

>At5g33715.1 68418.m04018 hypothetical protein
          Length = 162

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 25 SSDHAATSLAKLPQTRAPGTNFHRVLARPVSGGLRCAGAPTDLTLFRLVTAMIDTLGGKF 84
          S+DH+A  +   PQ  +  + FH  +  P   G +C G P    L+ +  A  +  G   
Sbjct: 22 SNDHSAAFIENRPQANSSVSPFHHCVPSP---GDQCMGGPHSSHLYGV--AQHEDFGYDQ 76

Query: 85 GFLVHIL 91
          G+L  ++
Sbjct: 77 GYLQEVM 83


>At3g17130.1 68416.m02186 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 59  RCAGAPTDLTLFRLVTAMIDTLGGKFGFLVHIL 91
           +CA     +  F +  AM    GGKFGF +++L
Sbjct: 99  QCAELYRPVVKFNIPQAMEAMQGGKFGFAIYVL 131


>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
           similarity to peflin [Homo sapiens] GI:6015440; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 354

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 4   AVFGGVHRPESGKAQAPQQGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGGLRCAGA 63
           AV  G  +P+S  + AP  G+SS  A    A  P   +PG        +P  GG    GA
Sbjct: 47  AVPYGASKPQSSSSSAPTYGSSSYGAPPPSA--PYAPSPGDYNKPPKEKPYGGGY---GA 101

Query: 64  P 64
           P
Sbjct: 102 P 102


>At4g02600.1 68417.m00354 seven transmembrane MLO family protein /
           MLO-like protein 1 (MLO1) identical to MLO-like protein
           1 (MLO protein homolog 1) [Arabidopsis thaliana]
           SWISS-PROT:O49621; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 526

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 12  PESGKAQAPQQGTSSDHAATSLAKLPQTRAPGTN 45
           P+SG   AP  G  +  A   L+++ +  A  TN
Sbjct: 484 PDSGSGSAPAAGPGAGFAGIQLSRVTRNNAGDTN 517


>At4g15510.2 68417.m02369 photosystem II reaction center PsbP
          family protein contains PsbP domain PF01789; identical
          to SP:O23403 (Arabidopsis thaliana)
          Length = 229

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 22 QGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGG 57
          +G S+D   ++   L  +R+  T+FH + +RP+S G
Sbjct: 15 KGASTDSFKST--SLSSSRSLVTDFHLLFSRPISSG 48


>At4g15510.1 68417.m02370 photosystem II reaction center PsbP
          family protein contains PsbP domain PF01789; identical
          to SP:O23403 (Arabidopsis thaliana)
          Length = 287

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 22 QGTSSDHAATSLAKLPQTRAPGTNFHRVLARPVSGG 57
          +G S+D   ++   L  +R+  T+FH + +RP+S G
Sbjct: 15 KGASTDSFKST--SLSSSRSLVTDFHLLFSRPISSG 48


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,911
Number of Sequences: 28952
Number of extensions: 78576
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 6
length of query: 97
length of database: 12,070,560
effective HSP length: 70
effective length of query: 27
effective length of database: 10,043,920
effective search space: 271185840
effective search space used: 271185840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)