Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000608-TA|BGIBMGA000608-PA|IPR001623|Heat shock protein
DnaJ, N-terminal
         (358 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.58 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.1  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 101 WGQMMMVAVPSDEIWGINFRYLNYLIPLVAALGVWTVGNIGHEQGTLKWPLLAAYVS--- 157
           +G + M+ VPSD IW  +    N        + + T   I H QG ++W   A Y S   
Sbjct: 97  YGGVKMLHVPSDHIWRPDIVLYNNADGNF-EVTLATKATIYH-QGLVEWKPPAIYKSSCE 154

Query: 158 YPLRYFIYDETVFFTIMVLSAALAFDSFSKQWR 190
             + YF +DE    T ++   +  +D F    R
Sbjct: 155 IDVEYFPFDEQ---TCVLKFGSWTYDGFKVDLR 184


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 244 FTSPWWLDVKQCLID-TYQYAQHHGWYEVWKQIID---LSDPHGEQNAYKVLGL 293
           F  P WL V    ++ +  Y Q   WY  WK ++    L++P  +++  K L L
Sbjct: 649 FFFPKWLQVLALWLNHSPNYDQVTNWYMGWKGMLSEKILAEPLVKEHFKKALEL 702


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 101 WGQMMMVAVPSDEIW 115
           +G + M+ VPSD IW
Sbjct: 97  YGGVKMLHVPSDHIW 111


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 101 WGQMMMVAVPSDEIW 115
           +G + M+ VPSD IW
Sbjct: 93  YGGVEMLHVPSDHIW 107


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.141    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,127
Number of Sequences: 429
Number of extensions: 4991
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 358
length of database: 140,377
effective HSP length: 58
effective length of query: 300
effective length of database: 115,495
effective search space: 34648500
effective search space used: 34648500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)