GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000608-TA|BGIBMGA000608-PA|IPR001623|Heat shock protein
DnaJ, N-terminal
         (358 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.84 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   2.6  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    22   5.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.9  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    22   5.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   7.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 240 LHHFFTSPWWLDVKQCLIDTYQYAQHHGWYEVWKQIID---LSDPHGEQNAYKVL 291
           L  FF   W   +   L     YA+   WY  WK ++    L+ P  ++N +  L
Sbjct: 648 LDKFFFPRWRQTLAMWLNHNPNYAEVTDWYTGWKNMLSDELLAQPTIKENFHTAL 702


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 295 PEATQQEITSTWRRLSREHHPDKVKDENGRRAAQERFMEI 334
           P+  + ++ S W  + +    DKV DEN     +E+F+ +
Sbjct: 162 PKKIRSKLGSIWHSVKKTVAGDKVLDENAAE-HREQFVSL 200


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 272 WKQIIDLSDPHGE 284
           W+Q+I + DP GE
Sbjct: 98  WQQLISVYDPKGE 110


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 109  VPSDEIWGINFRYLNYLIPLVAALGVWTVGNI 140
            +P ++ + I    LN ++P+VAA+ V  V  I
Sbjct: 1595 IPKEDTFQIILANLNLVVPVVAAVLVIIVAII 1626


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 272 WKQIIDLSDPHGE 284
           W+Q+I + DP GE
Sbjct: 98  WQQLISVYDPKGE 110


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 66  EDPKYVEDLIGRMIRNKKPPFS 87
           E   YVEDL+G +  N   P +
Sbjct: 221 EPEDYVEDLVGHIEVNHSAPIT 242


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.141    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,404
Number of Sequences: 317
Number of extensions: 4060
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 358
length of database: 114,650
effective HSP length: 58
effective length of query: 300
effective length of database: 96,264
effective search space: 28879200
effective search space used: 28879200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)