GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000606-TA|BGIBMGA000606-PA|undefined
         (81 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36477-1|AAA91035.1|  664|Drosophila melanogaster neuron specifi...    29   1.0  
BT025207-1|ABF17898.1|  653|Drosophila melanogaster FI01106p pro...    29   1.0  
AF145627-1|AAD38602.1|  567|Drosophila melanogaster scratch prot...    29   1.0  
AE014296-729|AAF47819.1|  653|Drosophila melanogaster CG1130-PA ...    29   1.0  

>U36477-1|AAA91035.1|  664|Drosophila melanogaster neuron specific
          zinc finger transcriptionfactor protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/11 (90%), Positives = 11/11 (100%)

Query: 1  MPRCLMAKKWK 11
          MPRCL+AKKWK
Sbjct: 1  MPRCLIAKKWK 11


>BT025207-1|ABF17898.1|  653|Drosophila melanogaster FI01106p
          protein.
          Length = 653

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/11 (90%), Positives = 11/11 (100%)

Query: 1  MPRCLMAKKWK 11
          MPRCL+AKKWK
Sbjct: 1  MPRCLIAKKWK 11


>AF145627-1|AAD38602.1|  567|Drosophila melanogaster scratch
          protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/11 (90%), Positives = 11/11 (100%)

Query: 1  MPRCLMAKKWK 11
          MPRCL+AKKWK
Sbjct: 1  MPRCLIAKKWK 11


>AE014296-729|AAF47819.1|  653|Drosophila melanogaster CG1130-PA
          protein.
          Length = 653

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/11 (90%), Positives = 11/11 (100%)

Query: 1  MPRCLMAKKWK 11
          MPRCL+AKKWK
Sbjct: 1  MPRCLIAKKWK 11


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.144    0.513 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,693
Number of Sequences: 52641
Number of extensions: 51100
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 4
length of query: 81
length of database: 24,830,863
effective HSP length: 61
effective length of query: 20
effective length of database: 21,619,762
effective search space: 432395240
effective search space used: 432395240
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)