Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000605-TA|BGIBMGA000605-PA|IPR007087|Zinc finger,
C2H2-type
(95 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 69 1e-13
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 63 6e-12
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 58 2e-10
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 56 1e-09
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 54 4e-09
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 49 1e-07
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 49 1e-07
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 46 1e-06
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 45 2e-06
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 43 7e-06
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 40 6e-05
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 33 0.006
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 29 0.16
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 0.28
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 0.37
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 27 0.37
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 0.85
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 2.6
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 25 2.6
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 25 2.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 3.4
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 24 3.4
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 24 4.5
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.5
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 24 4.5
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 24 4.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 24 4.5
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 23 6.0
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 23 6.0
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 23 6.0
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 23 7.9
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 23 7.9
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 23 7.9
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 68.9 bits (161), Expect = 1e-13
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 15 CGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKS 74
C K F+R + L+ H+ +HT +P+ C+ C KSFA + + R H Q H+ K + C C++
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQR 636
Query: 75 FALKSYLNKHQEA 87
FA LN+H ++
Sbjct: 637 FARMDALNRHYKS 649
Score = 45.6 bits (103), Expect = 1e-06
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 41 ASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFALKSYLNKHQE 86
A C K F NL++H+ TH++ + ++CS C KSFA + +H++
Sbjct: 575 AGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQ 620
Score = 40.7 bits (91), Expect = 4e-05
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 12 CGVCGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQT 59
C +C K F+R R H + HTG K + C +C + FA L H ++
Sbjct: 602 CSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKS 649
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 63.3 bits (147), Expect = 6e-12
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 15 CGKHFSRPWLLRGHVRSHTGEKPYNC--ASCGKSFADRSNLRAHLQTHSSDKKYEC--SR 70
CGK +SRP LL H+R+H+ E+P+ C C K+F +S+L+ H + H++ K + C
Sbjct: 30 CGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89
Query: 71 CHKSFALKSYLNKHQE 86
C F + +L +H E
Sbjct: 90 CDAQFYTQQHLERHIE 105
Score = 48.8 bits (111), Expect = 1e-07
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 7 RMGHI--CGVCGKHFSRPWLLRGHVRSHTG----EKPYNCA--SCGKSFADRSNLRAHLQ 58
R H+ C +CG+ F LR HV H K Y+C C KSF S L+ H+
Sbjct: 199 REAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHIS 258
Query: 59 T-HSSDKKYECSRCHKSFALKSYLNKHQE 86
H + + C C F K L +H E
Sbjct: 259 VIHEGNMAFHCDSCGTKFGYKHMLQRHLE 287
Score = 48.0 bits (109), Expect = 2e-07
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 15 CGKHFSRPWLLRGHVRSHTGEKPYNCA--SCGKSFADRSNLRAHLQTHSSDKKYECS--R 70
C K F R L+ H R HT KP++C C F + +L H++ H K Y C+
Sbjct: 60 CSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEG 119
Query: 71 CHKSFALKSYLNKHQEA 87
C + F+ L H A
Sbjct: 120 CDECFSKHQQLRSHISA 136
Score = 37.9 bits (84), Expect = 3e-04
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 3 VLTHRMGHICGVCGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQTHSS 62
++++ H V + F + L+ H+R P +C+ CG+ F ++LR H+ H +
Sbjct: 172 IISYSCPHESCVGHEGFEKWSQLQNHIRE--AHVP-SCSICGRQFKTAAHLRHHVVLHQT 228
Query: 63 D----KKYEC--SRCHKSFALKSYLNKH 84
K Y C C KSF S L KH
Sbjct: 229 TLEERKTYHCPMEGCKKSFTRSSALKKH 256
Score = 37.1 bits (82), Expect = 5e-04
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 15 CGKHFSRPWLLRGHVRS-HTGEKPYNCASCGKSFADRSNLRAHLQTHSSDKKYE 67
C K F+R L+ H+ H G ++C SCG F + L+ HL+ + K ++
Sbjct: 243 CKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAHK 296
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 58.0 bits (134), Expect = 2e-10
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 15 CGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKS 74
C K +R + + H+++H ++PY C C F +L+ HL+ H + + Y C C K
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKR 508
Query: 75 FALKSYLNKH-QEAACVRSDD 94
F LN+H Q CV D
Sbjct: 509 FNRLDALNRHKQRNICVGGVD 529
Score = 32.7 bits (71), Expect = 0.010
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 2 HVLTHRMG--HICGVCGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQ 58
H+ TH + C +C F R L+ H+R H +PY C C K F L H Q
Sbjct: 463 HIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVC-ECLKRFNRLDALNRHKQ 520
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 55.6 bits (128), Expect = 1e-09
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 12 CGVCGKHFSRPWLLRGHVRSHTGEKPYNC--ASCGKSFADRSNLRAHLQTH 60
C C + FSRP L+ H SHTGE+P+ C A CGK+F RSN+R H + H
Sbjct: 470 CTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 54.0 bits (124), Expect = 4e-09
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 11 ICGVCGKHFSRPWLLRGHVRS-HTGEKPYNCASCGKSFADRSNLRAHLQTH 60
+C C K F R LR H+RS HT EKP+ C CGK F+ R NLR H + H
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQHERLH 473
Score = 39.9 bits (89), Expect = 6e-05
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 34 GEKPYNCASCGKSFADRSNLRAHLQT-HSSDKKYECSRCHKSFALKSYLNKHQ 85
G K + C C K F +LR H+++ H+S+K + C C K F+ + L +H+
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQHE 470
Score = 28.3 bits (60), Expect = 0.21
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 11 ICGVCGKHFSRPWLLRGHVRSHTGEKP 37
+C +CGK FSR LR H R H P
Sbjct: 453 VC-ICGKRFSRRDNLRQHERLHVNASP 478
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 48.8 bits (111), Expect = 1e-07
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 12 CGVCGKHFSRPWLLRGHVRSHTGEKPYNCA--SCGKSFADRSNLRAHLQTH 60
C C + F R H+RSHTGEKP+ C+ SC K F R L H++TH
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 37.5 bits (83), Expect = 3e-04
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 36 KPYNCASCGKSFADRSNLRAHLQTHSSDKKYECS--RCHKSFALKSYLNKH 84
K Y C C + F + + H+++H+ +K +ECS C K F + L +H
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRH 52
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 48.8 bits (111), Expect = 1e-07
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 25 LRGHVRSHT-GEKPYNCA--SCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFALKSYL 81
L+ R+H G+ + C C KSF + +LR H +TH + K + CS C+++FA L
Sbjct: 12 LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVL 71
Query: 82 NKH 84
N+H
Sbjct: 72 NRH 74
Score = 39.9 bits (89), Expect = 6e-05
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 15 CGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQ 58
C K F+R LR H R+H K ++C+ C ++FA L H+Q
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQ 76
Score = 23.8 bits (49), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 45 KSFADRSNLRAHLQTHS-SDKKYECSR--CHKSFALKSYLNKHQ 85
+SF ++ L+ + H D ++ C+ C KSF K +L +H+
Sbjct: 5 ESFTEKP-LKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHE 47
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 46.0 bits (104), Expect = 1e-06
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 34 GEKPYNC--ASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFALKSYLNKHQEAACVR 91
G+ Y C C KSF + + R H ++H++ K + C C SF LN+H V+
Sbjct: 13 GDIRYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVK 72
Query: 92 SDD 94
+D
Sbjct: 73 QND 75
Score = 37.9 bits (84), Expect = 3e-04
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 15 CGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHL-QTH 60
C K F+R R H RSHT K + C C SF L H+ Q H
Sbjct: 24 CTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 45.2 bits (102), Expect = 2e-06
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 10 HICGVCGKHFSRPWLLRGHVRSHTGEKPYNCA-------SCGKSFADRSNLRAHLQ 58
++C C + F+R L+ H+RSHT EKP+ C+ CG+ F+ R L H Q
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQ 125
Score = 41.1 bits (92), Expect = 3e-05
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 36 KPYNCASCGKSFADRSNLRAHLQTHSSDKKYECSR-------CHKSFALKSYLNKHQE 86
K Y C +C ++FA +L+ H+++H+++K + CS C + F+ + L +HQ+
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQ 125
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 43.2 bits (97), Expect = 7e-06
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 12 CGVCGKHFSRPWLLRGHVRSHTGEKPYNCA--SCGKSFADRSNLRAHLQTHSS 62
C +C K F R H+R+HTGEKP+ C C K F+ L H + H++
Sbjct: 28 CPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTN 80
Score = 38.7 bits (86), Expect = 1e-04
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 36 KPYNCASCGKSFADRSNLRAHLQTHSSDKKYECS--RCHKSFALKSYLNKH 84
+PY C C K+F + H++TH+ +K + C+ C K F+ L +H
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRH 74
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 39.9 bits (89), Expect = 6e-05
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 25 LRGHVRSHTGEKPYNCA--SCGKSFADRSNLRAHLQT-HSSD 63
L H+RSHTGEKP+ C+ C +SF L H++T H +D
Sbjct: 93 LVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVHEAD 134
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 33.5 bits (73), Expect = 0.006
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 12 CGVCGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQTHSSDK 64
C C K F+R L H H+ +P C C + L+ H+Q +DK
Sbjct: 33 CDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Score = 32.7 bits (71), Expect = 0.010
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 35 EKPYNCASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFALKSYLNKH 84
++ + C C K F NL H HS + C C K L +H
Sbjct: 28 KRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRH 77
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 28.7 bits (61), Expect = 0.16
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 4 LTHRMGHICGVCGKHFSRPWLLRGHVRSHTGEKPYNCASCGK-SFADRSNLRAHLQTHSS 62
L + +C VC +L G +R H G C SC K + +R N + ++
Sbjct: 477 LANASSDLCYVCHSALEEDCVLLGEIRCHIG-----CLSCTKCKYNNRENY-DWARWNNQ 530
Query: 63 DKKYECSRCH 72
K+ EC C+
Sbjct: 531 TKQIECYLCY 540
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 0.28
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 36 KPYNCASCGKSFADRSNLRAHLQTHS 61
KPY C C K + + + L+ H +THS
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH-RTHS 421
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.5 bits (58), Expect = 0.37
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 33 TGEKPYNCASCGKSFAD 49
T K NCA+CG+S AD
Sbjct: 59 TSNKQINCATCGESMAD 75
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 27.5 bits (58), Expect = 0.37
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 45 KSFADRSNLRAHLQTHSSDKKYECSRCHKS 74
K+ RS LR + D++Y CSRC +S
Sbjct: 11 KNIRARSCLRCRRRKVKCDRQYPCSRCKES 40
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 0.85
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 42 SCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFALKSYLN 82
+C D+ +QT D +EC CH+ L LN
Sbjct: 292 ACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLN 332
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 45 KSFADRSNLRAHLQTHSSDKKYECSRCHKS 74
+S DRS R+ + HSSDK+ R +++
Sbjct: 178 RSNQDRSRERSDNEQHSSDKREHSRRSYRN 207
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 2.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 14 VCGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQTHSSD 63
VCG FS GHV GEK A C A+ S L + + + S++
Sbjct: 201 VCGVQFSAVLQETGHVIVLGGEKWNVAAECDAWQANNSELSSSICSISAN 250
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 24.6 bits (51), Expect = 2.6
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 40 CASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFA 76
C CG L+ S YEC RC F+
Sbjct: 80 CPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFS 116
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 3.4
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 18 HFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSN-------LRAHLQTHSSDKKYECSR 70
H R W + ++ G++ +N S ++ DR++ + HL +SD+ E S
Sbjct: 284 HLDRDWYMNSESQNLLGDEVHNPFSDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSM 343
Query: 71 CHKSFALKSYLNK 83
K+ + S ++K
Sbjct: 344 WEKNRMITSGVSK 356
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 24.2 bits (50), Expect = 3.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 18 HFSRPWLLRGHVRSHTGEKPYNCASCGKSF 47
H + PW++ H G YN + +SF
Sbjct: 23 HPTEPWVIASHYNGQVGIWNYNTQTLVRSF 52
>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 23.8 bits (49), Expect = 4.5
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 51 SNLRAHLQTHSSDKKYECSRCHKSFALKSYLNKHQEAACVRS 92
S HL SD + S S+ L+SYL+ HQ+ V +
Sbjct: 4 SQTETHLSLILSDTAFPLSSFSYSYGLESYLS-HQQVRDVNA 44
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 23.8 bits (49), Expect = 4.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 70 RCHKSFALKSYLNKHQEAACVRSDD 94
R HKSF L++Y + E +SD+
Sbjct: 776 RKHKSFTLENYFGHNAEDESPQSDE 800
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 4.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 38 YNCASCGKSFADRSNLRAHLQ 58
+ C +C + F +RAH+Q
Sbjct: 259 FTCLTCNREFKSLEAVRAHMQ 279
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 23.8 bits (49), Expect = 4.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 65 KYECSRCHKSFALKSYLNKHQEAACVR 91
KY C C S+ K H E C++
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMK 136
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 23.8 bits (49), Expect = 4.5
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 60 HSSDKKYECSRCHKSFALKSYLNKHQE 86
+S+D+ Y C C + L S N+H++
Sbjct: 532 NSADETYTCEECEQKITL-SERNEHED 557
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 23.4 bits (48), Expect = 6.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 60 HSSDKKYECSRCHKSFALKSYLNKH 84
H + Y C++C A K +L H
Sbjct: 8 HLKSRCYVCAKCKTHLAFKGHLLSH 32
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 23.4 bits (48), Expect = 6.0
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 30 RSHTGEKPYNCASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFALKSYLNKHQ 85
RS T E P N + C A+ + L+ +SD S H S + KHQ
Sbjct: 37 RSDTWEPPENLSGCSAVLAEWKRRKRRLKGSNSDSD---SPHHASNPHPNSRQKHQ 89
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 23.4 bits (48), Expect = 6.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 40 CASCGKSFADRSNLRAHLQTHS 61
CA+CG+ + + R L HS
Sbjct: 423 CANCGRRYGNDPESRKELDKHS 444
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 23.0 bits (47), Expect = 7.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 60 HSSDKKYECSRCHKSF 75
H K Y+CS C ++F
Sbjct: 357 HGKRKVYQCSNCSQTF 372
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 23.0 bits (47), Expect = 7.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 27 GHVRSHTGEKPY 38
GH R H GE PY
Sbjct: 570 GHPRMHPGETPY 581
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 23.0 bits (47), Expect = 7.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 44 GKSFADRSNLRAHLQ 58
GK+F+D SNL H Q
Sbjct: 53 GKTFSDPSNLNIHQQ 67
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.132 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,098
Number of Sequences: 5004
Number of extensions: 17139
Number of successful extensions: 118
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 57
length of query: 95
length of database: 2,362,478
effective HSP length: 62
effective length of query: 33
effective length of database: 2,052,230
effective search space: 67723590
effective search space used: 67723590
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 47 (23.0 bits)
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