GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000603-TA|BGIBMGA000603-PA|IPR011046|WD40-like,
IPR010978|tRNA-binding arm
         (1113 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    27   0.54 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    27   0.54 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   2.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   6.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   8.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   8.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 372  VDELTGEQEM-LREEVANLSSAREKLRDRVTQLEDELRRLKEAMSNNAGGGDNEEEADVP 430
            VDEL     + +  ++  L     +  D+ T++  E+R+    ++  +GGG+N+    + 
Sbjct: 1333 VDELRSRDPIKIVADLQKLKGINNEYEDQ-TEVPVEMRKTVSNLAQTSGGGENKPIFYLD 1391

Query: 431  LAQRRRFTRV 440
             A +RR T++
Sbjct: 1392 EAFQRRVTQI 1401


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 372  VDELTGEQEM-LREEVANLSSAREKLRDRVTQLEDELRRLKEAMSNNAGGGDNEEEADVP 430
            VDEL     + +  ++  L     +  D+ T++  E+R+    ++  +GGG+N+    + 
Sbjct: 1333 VDELRSRDPIKIVADLQKLKGINNEYEDQ-TEVPVEMRKTVSNLAQTSGGGENKPIFYLD 1391

Query: 431  LAQRRRFTRV 440
             A +RR T++
Sbjct: 1392 EAFQRRVTQI 1401


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 366 DDLIVKVDELTGEQEMLREEVANLSSAREKLR-DRVTQLEDELRRLKEAMSNNAGGGDNE 424
           DDL+V  + L    E LR+    L  AR  +  ++   ++ E++ L   ++ N    D E
Sbjct: 459 DDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHILTINGIKADPE 518

Query: 425 EEADV---PLAQRRRFTR 439
           + + +   P+ Q+ +  R
Sbjct: 519 KISAIRNFPVPQKTKHVR 536


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 769 DEAENDGHDSPPLSS-TPNNVTEPSVSSPEPGLDAFAQEQSNVENRGDVPDRKMST 823
           D+++ND  + P   S  P N + P +     G+    ++  NV+   +  + K +T
Sbjct: 39  DDSDNDEEERPSFKSRKPKNYSAP-IGFVAGGVQQAGKKPENVKKEDESDEEKPTT 93


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 411 KEAMSNNAGGGDNEEEADVPLAQRRRFTR 439
           K+  ++N G  D + E  +PL +++R +R
Sbjct: 196 KDKSTDNEGVSDCDSEPGIPLKRKQRRSR 224


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 953 CHGDGVWVSI----KMDSTLGLYHAHTYKNLCNVDIEPYVSK 990
           C GD V + +      DST   +H H  KN   +D  P+V++
Sbjct: 113 CLGDEVIIDVVNHLSSDSTTIHWHGHHQKNSPYMDGVPFVTQ 154


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,963
Number of Sequences: 317
Number of extensions: 8640
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 1113
length of database: 114,650
effective HSP length: 64
effective length of query: 1049
effective length of database: 94,362
effective search space: 98985738
effective search space used: 98985738
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)