GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000603-TA|BGIBMGA000603-PA|IPR011046|WD40-like,
IPR010978|tRNA-binding arm
         (1113 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    28   0.37 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    27   0.85 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   6.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 49  RYDEDVVKTLMPLLVNVLECLDSAYQ 74
           +Y+E+ + T MPLL+NV++ L   ++
Sbjct: 90  KYEENTILTTMPLLINVVKYLGGKHK 115


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 25  HVVMSEKVQSLAGSIYQEFERMIARYDEDVVKTLMPLLVNVLECLDSAYQTNQEHEVELE 84
           H+ M +    ++G+++  F     R +       + LLV+     DS  ++ ++ + +L+
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFSQRQEVLQAFKQVQLLVS-----DSDVESYKQIKSDLD 187

Query: 85  LLREDNEQLVTQYEREKAARKYAEQKLLEAEDHYEG 120
           +LR+  E+      + KA+ ++  +K    ED  +G
Sbjct: 188 VLRQSVEKSELWVYKSKASEEHGNKKKKNKEDEDDG 223


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 746 KEPEEPAADNDENPKESMVKNVEDEAENDGHDSPPLSSTPNNVTEPSVSSPEPG 799
           ++  +  A   + P  S   N E EAE++ H     +STPN ++E  +  P PG
Sbjct: 260 EDSSDSGAAASDRPPASASSN-EHEAESE-H-----TSTPNFLSEAKIFPPTPG 306


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,252
Number of Sequences: 429
Number of extensions: 11537
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 5
length of query: 1113
length of database: 140,377
effective HSP length: 65
effective length of query: 1048
effective length of database: 112,492
effective search space: 117891616
effective search space used: 117891616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)