Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000600-TA|BGIBMGA000600-PA|IPR008973|C2
calcium/lipid-binding region, CaLB, IPR002048|Calcium-binding EF-hand,
IPR000008|C2 calcium-dependent membrane targeting, IPR000980|SH2
motif, IPR001452|Src homology-3,
IPR000909|Phosphatidylinositol-specific phospholipase C, X region,
IPR001711|Phosphatidylinositol-specific phospholipase C, Y domain,
IPR001849|Pleckstrin-like, IPR001192|Phosphoinositide-specific
phospholipase C, C-terminal (PLC),
IPR013841|Phosphatidylinositol-specific phospholipase C, X and Y boxes
         (1201 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   9.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   9.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 591 QGKVNHCRIKLKQERGVTKFYLIDSMCFDSLYNLITHYRSHPLRSQEFLITLKEPVPQP 649
           Q KV+  +I   ++R +    L +  C  SL   +TH  +H ++  +    LK P P P
Sbjct: 257 QAKVDPLKIPEAEKRKLIHL-LQEYRCIFSLRPGLTHKYTHEIKLHDKTPFLKRPYPVP 314


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 719 VKFESLIELVSYYENHPLYKKVKLWYP 745
           ++F  L   + YY+   LYKK+K  +P
Sbjct: 269 LRFGCLSTRLFYYQLTDLYKKIKKAFP 295


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 813 WWRGDYGGKRHHW 825
           +WR D G   HHW
Sbjct: 196 YWREDIGLNLHHW 208


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,261
Number of Sequences: 317
Number of extensions: 12369
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 1201
length of database: 114,650
effective HSP length: 65
effective length of query: 1136
effective length of database: 94,045
effective search space: 106835120
effective search space used: 106835120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)