Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000599-TA|BGIBMGA000599-PA|IPR011009|Protein
kinase-like, IPR000719|Protein kinase
         (617 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   8.2  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   8.2  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 39  EIYDRNDDVYLQPDLNQFPDI 59
           E +DR  D++L+  L ++PD+
Sbjct: 577 EAFDRVKDLFLEAVLLRYPDL 597


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 470 LTHCLNQLDGGTAAKVELMSRDEQSVLVVSYAE 502
           LT CL +  G T+  +EL+    + +  V +AE
Sbjct: 95  LTFCLQEEGGTTSQLIELLGDAGKLLASVHFAE 127


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,802
Number of Sequences: 317
Number of extensions: 5618
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 2
length of query: 617
length of database: 114,650
effective HSP length: 61
effective length of query: 556
effective length of database: 95,313
effective search space: 52994028
effective search space used: 52994028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)