GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000599-TA|BGIBMGA000599-PA|IPR011009|Protein
kinase-like, IPR000719|Protein kinase
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)              214   2e-55
SB_54934| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   2e-34
SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.39 
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.90 
SB_23777| Best HMM Match : Pkinase (HMM E-Value=0.065)                 33   0.90 
SB_17071| Best HMM Match : Pkinase (HMM E-Value=0.065)                 33   0.90 
SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)                     32   1.6  
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)                     31   2.1  
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.7  
SB_18146| Best HMM Match : Pkinase (HMM E-Value=0)                     31   2.7  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.7  
SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15)                30   4.8  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.3  
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)                       30   6.3  
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.3  
SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)               30   6.3  
SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.4  

>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score =  214 bits (522), Expect = 2e-55
 Identities = 119/298 (39%), Positives = 177/298 (59%), Gaps = 23/298 (7%)

Query: 193 HALVLVYQYHPAAVTLMNKYLXXXXXXXXXXXXXYHDPFSSDPDA--PRPYTHQKNAMLR 250
           ++LV VY YHP A TL++++                 P ++D     P P         R
Sbjct: 187 NSLVFVYDYHPGAETLLSRHFSGPDSTL---------PVNADGSLAFPAPNRAGMPGANR 237

Query: 251 AVACGALLPEAVLWSLLVQLTAGLRAIHTAGLACRSLEPNKVIMNG-CRVRIAWCGAADA 309
             +   L+PE ++WS ++QL++ LRAIH+AGL CR ++P+K+++ G  R+RI  CG  D 
Sbjct: 238 GGSRHGLMPERLIWSYIIQLSSALRAIHSAGLPCRMIDPSKILLIGNSRLRINGCGIFDI 297

Query: 310 LH---SNTNDVV--QAQQDDXXXXXXXXXX-XXC---RTIHCDNLAASMELVARTYSADL 360
           L    SN+++ +    QQ+D             C   ++I  +++  S+E VA  YS+DL
Sbjct: 298 LSFDPSNSSNAMIPHFQQEDLTSLGKLVLALASCYSLQSIQREHIQQSLEYVAMNYSSDL 357

Query: 361 KNLILYLLSSSPAR--RSVIDLMPMIGARFYTQVEALERRADAFEDQLSQEIDNXXXXXX 418
           KNL++YLLS+      +SV D+MPMIGARFYTQ+EA + + D  E +L++E++N      
Sbjct: 358 KNLVIYLLSNQMTTHLKSVNDIMPMIGARFYTQLEAAQVKCDVMEGELAKEMENGRLLRL 417

Query: 419 XXXXXXVNERPELNLDPAWSETGDRYMLKLFRDYLFHSVTTDGRPWLDQAHLTHCLNQ 476
                 VNERPEL +DP+WSETGDRY+LKLFRD++FH VT  G P +D +H+  CLN+
Sbjct: 418 LTKLGVVNERPELGMDPSWSETGDRYLLKLFRDHVFHQVTDAGTPVVDLSHVVTCLNK 475



 Score = 50.0 bits (114), Expect = 6e-06
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 80  MSTSYRATNRQNGDYVALRRLHSYTSPASKRL---EMWKQIDHPNIVRLEEYFSTKAFND 136
           ++T Y+A N ++G    LRR+H +    +K +   + WK+I H N+V L E F++KAF D
Sbjct: 127 ITTCYKAINSKDGLLYVLRRVHGFRLVNAKSMVIVDQWKKISHSNLVSLREVFTSKAFGD 186


>SB_54934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score =  144 bits (349), Expect = 2e-34
 Identities = 66/123 (53%), Positives = 89/123 (72%), Gaps = 2/123 (1%)

Query: 356 YSADLKNLILYLLSSSPAR--RSVIDLMPMIGARFYTQVEALERRADAFEDQLSQEIDNX 413
           YS+DLKNL++YLLS+      +SV D+MPMIGARFYTQ+EA + + D  E +L++E++N 
Sbjct: 3   YSSDLKNLVIYLLSNQMTTHLKSVNDIMPMIGARFYTQLEAAQVKCDVMEGELAKEMENG 62

Query: 414 XXXXXXXXXXXVNERPELNLDPAWSETGDRYMLKLFRDYLFHSVTTDGRPWLDQAHLTHC 473
                      VNERPEL +DP+WSETGDRY+LKLFRD++FH VT  G P +D +H+  C
Sbjct: 63  RLLRLLTKLGVVNERPELGMDPSWSETGDRYLLKLFRDHVFHQVTDAGTPVVDLSHVVTC 122

Query: 474 LNQ 476
           LN+
Sbjct: 123 LNK 125


>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1287

 Score = 33.9 bits (74), Expect = 0.39
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 257 LLPEAVLWSLLVQLTAGLRAIHTAGLACRSLEPNKVIMNGCR-VRIAWCGAA 307
           LLPE+V+ +++ Q+  GL  IH  G   R ++P  ++  G   V+IA  G A
Sbjct: 62  LLPESVIRNVIYQILQGLAFIHKHGYFHRDMKPENLLCTGHELVKIADFGLA 113


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 32.7 bits (71), Expect = 0.90
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 60  PDSVDMYAELVPLEGAVTHSMSTSYRATNRQNGDYVALRRLHSYTSPASKRLEM------ 113
           PD   +Y ++ P E   +      Y   +RQ+G  VA++ +     P  +  ++      
Sbjct: 516 PDISQLY-QVFPDEILGSGQFGIVYGGVHRQSGREVAVKVIDKLRFPTKQEAQLKNEVAI 574

Query: 114 WKQIDHPNIVRLEEYFSTK 132
            KQ++HP +V LE+ F T+
Sbjct: 575 LKQLNHPGMVTLEQMFETQ 593


>SB_23777| Best HMM Match : Pkinase (HMM E-Value=0.065)
          Length = 97

 Score = 32.7 bits (71), Expect = 0.90
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 79  SMSTSYRATNRQNGDYVALRR-LHSYTSPASKRL-----EMWKQIDHPNIVRLEEYFSTK 132
           S    ++  +++ G  VA+++ + S   P  K++     +M KQ+ HPN+V L E F  K
Sbjct: 14  SYGVVFKCRHKETGQIVAIKKFVESEDDPLIKKIAMREVKMLKQLKHPNLVNLLEVFKRK 73


>SB_17071| Best HMM Match : Pkinase (HMM E-Value=0.065)
          Length = 97

 Score = 32.7 bits (71), Expect = 0.90
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 79  SMSTSYRATNRQNGDYVALRR-LHSYTSPASKRL-----EMWKQIDHPNIVRLEEYFSTK 132
           S    ++  +++ G  VA+++ + S   P  K++     +M KQ+ HPN+V L E F  K
Sbjct: 14  SYGVVFKCRHKETGQIVAIKKFVESEDDPLIKKIAMREVKMLKQLKHPNLVNLLEVFKRK 73


>SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 641

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 79  SMSTSYRATNRQNGDYVALRRLHSYTSPASK-----RLEMWKQIDHPNIVRLEEYF-STK 132
           S  + Y+  + + G  VA   L    S + +       EM KQ+ HPNIV+  +++ S +
Sbjct: 90  SFKSVYQGLDTETGVAVAWCELQDKYSRSERARFREEAEMLKQLQHPNIVKFHDFWESRQ 149

Query: 133 AFNDICRMNCVIMLRYRAPTVPHQKKCNGVKSQDL 167
              D  R+  V  L        + K+  GVK + L
Sbjct: 150 TRTDKKRVMLVTELMTSGTLKTYLKRFKGVKEKIL 184


>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 226

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 10/63 (15%)

Query: 77  THSMSTSYRATNRQN-GDYVALRRLHSYTS----PAS--KRLEMWKQID---HPNIVRLE 126
           T +  T Y+A +  N G +VAL+R+    S    P S  + + + KQID   HPN+VRL 
Sbjct: 13  TGAYGTVYKAKDLLNDGKFVALKRVRIQNSEEGMPLSTIREIALLKQIDNFAHPNVVRLL 72

Query: 127 EYF 129
           + F
Sbjct: 73  DIF 75


>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 258 LPEAVLWSLLVQLTAGLRAIHTAGLACRSLEPNKVIMNG 296
           LPEA +     ++   L  IHT G+    L+P+KV+++G
Sbjct: 93  LPEATVKHFGAEIAKALFYIHTLGIVYCDLKPSKVLLDG 131


>SB_18146| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 888

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 258 LPEAVLWSLLVQLTAGLRAIHTAGLACRSLEPNKVIMNG 296
           LPEA +     ++   L  IHT G+    L+P+KV+++G
Sbjct: 93  LPEATVKHFGAEIAKALFYIHTLGIVYCDLKPSKVLLDG 131


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 263  LWSLLVQLTAGLRAIHTAGLACRSLEPNKVIMN-GCRVRIAWCGAADALHSNTNDVVQAQ 321
            +W LL ++  GL  IH+ G+  R L+P  + ++ G  +++   G A   H  T   + A+
Sbjct: 1076 VWRLLREIVEGLAHIHSQGIIHRDLKPVNIFLDAGGHIKLGDFGLA-TTHDKTRGGLTAE 1134


>SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15)
          Length = 280

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 267 LVQLTAGLRAIHTAGLACRSLEPNKVIMN-GCRVRIAWCGAA 307
           L Q+  GL+ IH+A +  R L+P+ +++N  C ++I   G A
Sbjct: 19  LYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA 60


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 260 EAVLWSLLVQLTAGLRAIHTAGLACRSLEPNKV 292
           E  +W+ L+ LT GL+ +H +G+    ++P  V
Sbjct: 574 EREVWNFLLDLTLGLKHLHDSGMVHMDIKPANV 606


>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
          Length = 719

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 50  QPDLNQFPDIPDSVDM----YAELVPLEGAVTHS--MSTSYRATNRQNGDYVALRRLHSY 103
           Q   N +P++PDS  M    +A +  LEG  T         +   ++   Y +  +LHS+
Sbjct: 335 QQAYNPYPNVPDSTPMNDFIFAVMTALEGEKTEEEREKAEIQVLTKELEQYKS--KLHSF 392

Query: 104 -TSPASKRLEMWKQIDHPNIVRLEE 127
              P  K  E+W  +  P  +R  +
Sbjct: 393 PPPPRDKSKEVWVPLPSPEQLRTND 417


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 79  SMSTSYRATNRQNGDYVALRRLHSYTSPASKRLEMWKQIDHPNIVRLEEYF 129
           S    Y+A    + + VA++++       ++ L++ +++DH NIVRL  +F
Sbjct: 41  SFGVVYQARMCDSTELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRWFF 91


>SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)
          Length = 460

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 255 GALLPEAVLWSLLVQLTAGLRAIHTAGLACRSLEPNKVIMN 295
           G  L EA L  LL+QL  GL+ IH+  L    ++P  + ++
Sbjct: 232 GERLSEADLKMLLLQLAQGLKYIHSLHLVHMDIKPGNIFIS 272


>SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 255 GALLPEAVLWSLLVQLTAGLRAIH-TAGLACRSLEPNKVIM 294
           G    E  +W + +Q+  GLR IH    +  R L PN +++
Sbjct: 298 GTRFSEERIWHIFIQIVLGLRYIHKEKHIVHRDLTPNNIML 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,800,235
Number of Sequences: 59808
Number of extensions: 773702
Number of successful extensions: 1300
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1282
Number of HSP's gapped (non-prelim): 20
length of query: 617
length of database: 16,821,457
effective HSP length: 86
effective length of query: 531
effective length of database: 11,677,969
effective search space: 6201001539
effective search space used: 6201001539
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)