GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000599-TA|BGIBMGA000599-PA|IPR011009|Protein
kinase-like, IPR000719|Protein kinase
         (617 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    34   0.003
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     34   0.003
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    24   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   7.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 34.3 bits (75), Expect = 0.003
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 58  DIPDSVDMYAELVPLEGAVTHSMSTSYRATNRQNGDYVALR-RLHSYTSPASKRLE 112
           D+P   D+Y  ++ LEGA     S  YR    QNGDYV L     S+ +P +K+LE
Sbjct: 351 DLPFIKDIYETVIKLEGA--SFRSKPYR-FGIQNGDYVVLETEWSSFINPWTKKLE 403


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 34.3 bits (75), Expect = 0.003
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 58  DIPDSVDMYAELVPLEGAVTHSMSTSYRATNRQNGDYVALR-RLHSYTSPASKRLE 112
           D+P   D+Y  ++ LEGA     S  YR    QNGDYV L     S+ +P +K+LE
Sbjct: 57  DLPFIKDIYETVIKLEGA--SFRSKPYR-FGIQNGDYVVLETEWSSFINPWTKKLE 109


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 550 YVTNAYGFSFSFGYINGFSRENNVPINNQFNE 581
           Y  + Y  S +FG +  F  E    I+N+ NE
Sbjct: 70  YKNSIYDVSMTFGPVPKFEGEMAEKISNELNE 101


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 12  GALPQPGPSTNKQGLAATFYNPETIRSEIYDRNDDVYLQPDLNQF 56
           G    P PS+     ++   +P ++ SE Y    D+++  DLN +
Sbjct: 86  GGSSSPSPSSPSSFFSSV--SPTSLGSENYTGISDLFVFDDLNDY 128


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 160 NGVKSQDLGGQYERLHDLEKPYAYIVIGLLQVLH 193
           N +   D+ G  E L D+   Y Y  I  L ++H
Sbjct: 480 NIIVKGDVAGSVEALLDIFDTYTYDTICQLNIVH 513


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 364 ILYLLSSSPARRSVIDLMPMIGARFYTQVEALERRADAFEDQLSQE 409
           +L  L    +R + + L+     RF   +E  ER+    ++QLS+E
Sbjct: 73  VLVPLGPETSRHTTLGLLTK-AKRFIKSLEERERKHAVHKEQLSRE 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,790
Number of Sequences: 429
Number of extensions: 6962
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 6
length of query: 617
length of database: 140,377
effective HSP length: 62
effective length of query: 555
effective length of database: 113,779
effective search space: 63147345
effective search space used: 63147345
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)