GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3IH23 Cluster: Putative orphan protein; n=1; Pseudoalt...    31   3.4  
UniRef50_A5ZD11 Cluster: Putative uncharacterized protein; n=1; ...    31   4.6  

>UniRef50_Q3IH23 Cluster: Putative orphan protein; n=1;
          Pseudoalteromonas haloplanktis TAC125|Rep: Putative
          orphan protein - Pseudoalteromonas haloplanktis (strain
          TAC 125)
          Length = 213

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 3/44 (6%)

Query: 1  MAFSSLMQNEIASRSLMQNPQNGVWFSVTYGLRKINKMASSYLK 44
          +AFS+L +NE  + +L  N ++ + F+V YGL+K+ K + S LK
Sbjct: 18 LAFSTLEENEFTNVTL--NSEDKIEFTVKYGLQKV-KCSLSILK 58


>UniRef50_A5ZD11 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides caccae ATCC 43185|Rep: Putative
           uncharacterized protein - Bacteroides caccae ATCC 43185
          Length = 698

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 24  VWFSVTYGLRKINKMASSYLKHIL---QNGVWFSVDFGLRRIYKMTSGSLST 72
           +WF+  YG++K     SS LK  L   ++ +W+S    L   Y+  +G + T
Sbjct: 262 LWFAAVYGMQKWKSKYSSLLKTQLPQMRDALWYSDGTKLNLYYRNEAGKMCT 313


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,584,421
Number of Sequences: 1657284
Number of extensions: 1939825
Number of successful extensions: 4531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4531
Number of HSP's gapped (non-prelim): 2
length of query: 72
length of database: 575,637,011
effective HSP length: 51
effective length of query: 21
effective length of database: 491,115,527
effective search space: 10313426067
effective search space used: 10313426067
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)