GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   0.97 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        19   5.2  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    18   9.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    18   9.0  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory
          receptor candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 0.97
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 10 EIASRSLMQNPQN-----GVWFSVTYGLRKINKMASSYLKHILQN 49
          E  S++LMQ          ++FSV Y L ++ +M  S+  ++L N
Sbjct: 2  EYRSQTLMQTTLRLIRDLSLYFSVIYSLLRVKRMMRSWY-YLLTN 45


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 19.0 bits (37), Expect = 5.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 8   QNEIASRSLMQNPQNGVWFS 27
           + E+A R+ +   +  VWFS
Sbjct: 250 REELAQRTKLTEARIQVWFS 269


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 18.2 bits (35), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 8   QNEIASRSLMQNPQNG 23
           QNE    S+ +N +NG
Sbjct: 97  QNESLEASVNENSKNG 112


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 18.2 bits (35), Expect = 9.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 1   MAFSSLMQNEIASRSLMQNPQNGVWF 26
           M  S L + EIA+   +   Q  +WF
Sbjct: 140 MYLSRLRRIEIATCLRLSEKQVKIWF 165


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457
Number of Sequences: 317
Number of extensions: 505
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 72
length of database: 114,650
effective HSP length: 45
effective length of query: 27
effective length of database: 100,385
effective search space:  2710395
effective search space used:  2710395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)