GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    27   0.40 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   1.2  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    24   2.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   3.7  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    23   3.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    23   3.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    22   8.6  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    22   8.6  

>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 9  NEIASRSLMQNPQNGVWFSVTYGL 32
          N  +S + +++PQNG W    YGL
Sbjct: 36 NNKSSTASLESPQNGSWHPSLYGL 59


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 15   SLMQN---PQNGVWFSVTYGLRKINKMASSYLKHILQNGVWFSVD 56
            SL+QN   PQN    +V+ G  +   +A SYLK      +W  ++
Sbjct: 3919 SLLQNAKIPQNIKKLTVSLGSAENESLADSYLKLASTEPLWLFIN 3963


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 10  EIASRSLMQNPQNGVWFSVTYGLRKINKMASSYLK-HILQNGVWFSVD 56
           E+ ++ + + PQ     ++  G+  I     +YL   +L+NGVW + D
Sbjct: 274 EVLNKEIAKTPQA----ALVGGVPSIRNKIRAYLNIRLLRNGVWINPD 317


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 1060

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 4  SSLMQNEIASRSLMQNPQNGVWFSVTYGL 32
          SSL      S +L++N QN  W S T GL
Sbjct: 69 SSLRSEMEMSNNLLKNTQNDTWTS-TVGL 96


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 285

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 3  FSSLMQNEIASRSLMQNPQNG 23
          F S   + +A+R  M+NPQ G
Sbjct: 13 FKSSQTSHLAARVAMENPQKG 33


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 41   SYLKHILQNGVWFSVDFGL 59
            S +K +  N VWF V FGL
Sbjct: 2197 SVIKILSLNNVWFPVIFGL 2215


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 6    LMQNEIASRSLMQNPQNGVWFSVTYGLRKINKMASSYLKHILQNGV 51
            LMQ +I    +      GVW  ++    K +K  S+   H+  N +
Sbjct: 1758 LMQEDIFYSLIEDAKTRGVWRDLSANQFKNSKSISNVSTHLASNNL 1803


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 27  SVTYGLRKINKMASSYLKHILQNGV 51
           ++TYG +++      + KH L NG+
Sbjct: 683 TITYGDKQVKFDVEPFRKHCLVNGL 707


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,221
Number of Sequences: 5004
Number of extensions: 8793
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 10
length of query: 72
length of database: 2,362,478
effective HSP length: 52
effective length of query: 20
effective length of database: 2,102,270
effective search space: 42045400
effective search space used: 42045400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)