GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    29   0.46 
04_04_0336 + 24500665-24502647                                         27   2.4  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    25   7.5  
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259...    25   7.5  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    25   9.9  
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255...    25   9.9  

>02_05_0481 +
           29361542-29361669,29362091-29362341,29362820-29363002,
           29363099-29363206,29363583-29363697,29363781-29364819,
           29364904-29365014,29365268-29365326,29366601-29366763,
           29367162-29367435,29367530-29367680,29367766-29367877,
           29367978-29368143,29368261-29368331,29368474-29368565,
           29368721-29368883,29369134-29369205,29369236-29369263,
           29369519-29369910,29369991-29370106,29370201-29370498,
           29370820-29371139,29371332-29371590,29371985-29372302,
           29372423-29372527,29372648-29372776,29374001-29374381,
           29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 12  ASRSLMQNPQNGVWFSVTYGLRKINKMASSYLKHILQNGVWFSVDFGLRRIYK 64
           AS S + +P +G +F V+     IN +   ++  IL NG  F VD  +RR+YK
Sbjct: 154 ASASELNSP-SGFFFGVSAISLAINML---FISKILFNGSGFDVDEYVRRLYK 202


>04_04_0336 + 24500665-24502647
          Length = 660

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 1   MAFSSLMQNEIASRSLMQNPQNGVWFSVTYGLRKINKMASSYLKHILQNGVW 52
           + FSSL +   AS  L   P       + YGL ++ + AS  L  +L NGV+
Sbjct: 478 LGFSSLSKTVQASAFLKLAPYKTP-VVLKYGLIQLQRHASIVLSKVLSNGVF 528


>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
            25826468-25827080,25827735-25827775,25830549-25831191,
            25832595-25834012,25834110-25834251,25834415-25834522,
            25835346-25835558,25835643-25835753,25836099-25836293,
            25836555-25836695,25836835-25836909
          Length = 1806

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 36   NKMASSYLKHILQNGVWFSVDFGLRRIYKMTSGS 69
            NK AS+ ++   Q+G     D  +R I K T G+
Sbjct: 1698 NKFASNVIEKCFQHGDMTERDLLIREIVKQTEGN 1731


>02_01_0360 -
           2594534-2594601,2594778-2594829,2594915-2595029,
           2595124-2595212,2595326-2595391,2595468-2595657,
           2595811-2596037,2596111-2596185,2596283-2596354,
           2596507-2596577,2596848-2597036,2597186-2597298,
           2598063-2598268
          Length = 510

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 16  LMQNPQNGVWFSVTYGLRKINKMASSYLKHIL--QNGVWFSVDFGLRRIYKMTS 67
           L Q+P NG   +  YGL  I     +YL H+L   +G    +DF  R I+ + S
Sbjct: 133 LRQSPSNGNSIASKYGLLLIILYPLAYLFHLLLKTDGDCICLDF--RAIHTIAS 184


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 14  RSLMQNPQNGVWFSVTYGLRKINK 37
           RSL +NP+ G  F+V  G +K  K
Sbjct: 352 RSLEENPEKGEGFNVEIGEKKKTK 375


>02_01_0354 +
           2551675-2551874,2552721-2552833,2552982-2553170,
           2553667-2553737,2553835-2553909,2553983-2554209,
           2554361-2554550,2554627-2554692,2554807-2554895,
           2554990-2555104,2555190-2555241,2555317-2555417,
           2555516-2555629
          Length = 533

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 16  LMQNPQNGVWFSVTYGLRKINKMASSYLKHIL 47
           L Q+P NG   +  YGL  I     +YL H+L
Sbjct: 131 LRQSPSNGNSIASKYGLLLIILYPLAYLFHLL 162


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,292
Number of Sequences: 37544
Number of extensions: 47270
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 14,793,348
effective HSP length: 52
effective length of query: 20
effective length of database: 12,841,060
effective search space: 256821200
effective search space used: 256821200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)