GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000598-TA|BGIBMGA000598-PA|undefined
         (72 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)          26   3.8  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.1  
SB_28803| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_8057| Best HMM Match : DUF1542 (HMM E-Value=2.3)                    25   6.7  
SB_4890| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.8  

>SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)
          Length = 529

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 19  NPQNGVWFSVTYGLRKINKMASSYLKHILQ 48
           N    +W +VT GLR  N ++++  KH ++
Sbjct: 464 NESRRLWHTVTLGLRSKNTVSATEAKHAVR 493


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 32  LRKINKMASSYLKHILQNGVWFS 54
           LRKI +  SS    ++ NG W+S
Sbjct: 376 LRKIKQSLSSKFSELVYNGFWYS 398


>SB_28803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 4  SSLMQNEIASRSLMQNPQNGVWFSVTYGLRKINKMA-SSYLKHILQNGVWFS-VDFGLRR 61
          S   ++++ +  L + P+NGV F + +  +++N ++ S Y + + Q     S +DF L R
Sbjct: 24 SEQSRSDVTTTVLARPPENGVSFQIRFIDQRVNAVSRSRYCRSLRQRHTSCSPLDFILLR 83

Query: 62 I 62
          +
Sbjct: 84 M 84


>SB_8057| Best HMM Match : DUF1542 (HMM E-Value=2.3)
          Length = 253

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 21 QNGVWFSVTYGLRKINKMASS 41
          Q GVW  +T+ L K+ KM+S+
Sbjct: 5  QVGVWRGITHHLTKVMKMSSN 25


>SB_4890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)

Query: 12  ASRSLMQNPQNGVWFSVT 29
           AS  L   P NG WFSVT
Sbjct: 113 ASDCLAGTPPNGEWFSVT 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.130    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,635
Number of Sequences: 59808
Number of extensions: 51290
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 16,821,457
effective HSP length: 50
effective length of query: 22
effective length of database: 13,831,057
effective search space: 304283254
effective search space used: 304283254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)